Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC22.2■■□□□ 1.14
MSH5O43196 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
MSH5O43196 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH5O43196 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH5O43196 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
MSH5O43196 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH5O43196 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC22.2■■□□□ 1.14
MSH5O43196 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC22.2■■□□□ 1.14
MSH5O43196 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH5O43196 TMEM174-201ENST00000296776 1759 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH5O43196 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
MSH5O43196 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH5O43196 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
MSH5O43196 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
MSH5O43196 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
MSH5O43196 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
MSH5O43196 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
MSH5O43196 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
MSH5O43196 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
MSH5O43196 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
MSH5O43196 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
MSH5O43196 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
MSH5O43196 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC22.19■■□□□ 1.14
MSH5O43196 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC22.19■■□□□ 1.14
MSH5O43196 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC22.19■■□□□ 1.14
MSH5O43196 LINC00159-202ENST00000414877 428 ntTSL 4 BASIC22.19■■□□□ 1.14
MSH5O43196 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC22.19■■□□□ 1.14
MSH5O43196 AL117382.1-201ENST00000438702 754 ntTSL 5 BASIC22.19■■□□□ 1.14
MSH5O43196 NDUFA5P8-201ENST00000449019 346 ntBASIC22.19■■□□□ 1.14
MSH5O43196 AL513480.1-201ENST00000451731 511 ntBASIC22.19■■□□□ 1.14
MSH5O43196 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
MSH5O43196 MTCO3P42-201ENST00000509488 518 ntBASIC22.19■■□□□ 1.14
MSH5O43196 MTCO3P39-201ENST00000514812 518 ntBASIC22.19■■□□□ 1.14
MSH5O43196 INTS4-205ENST00000527522 956 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
MSH5O43196 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
MSH5O43196 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC22.19■■□□□ 1.14
MSH5O43196 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC22.19■■□□□ 1.14
MSH5O43196 AL352977.2-201ENST00000557101 547 ntTSL 4 BASIC22.19■■□□□ 1.14
MSH5O43196 DUX4L17-201ENST00000557360 1267 ntBASIC22.19■■□□□ 1.14
MSH5O43196 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC22.19■■□□□ 1.14
MSH5O43196 TMED1-207ENST00000591695 809 ntTSL 5 BASIC22.19■■□□□ 1.14
MSH5O43196 AC010618.3-203ENST00000595116 313 ntTSL 3 BASIC22.19■■□□□ 1.14
MSH5O43196 LINC01115-203ENST00000606068 577 ntBASIC22.19■■□□□ 1.14
MSH5O43196 AC004775.1-201ENST00000607389 753 ntBASIC22.19■■□□□ 1.14
MSH5O43196 OR8D2-201ENST00000624618 1051 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
MSH5O43196 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC22.19■■□□□ 1.14
MSH5O43196 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC22.19■■□□□ 1.14
MSH5O43196 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
MSH5O43196 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC22.19■■□□□ 1.14
MSH5O43196 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
MSH5O43196 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC22.19■■□□□ 1.14
MSH5O43196 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC22.19■■□□□ 1.14
MSH5O43196 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
MSH5O43196 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC22.19■■□□□ 1.14
MSH5O43196 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC22.19■■□□□ 1.14
MSH5O43196 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC22.19■■□□□ 1.14
MSH5O43196 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
MSH5O43196 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH5O43196 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
MSH5O43196 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC22.18■■□□□ 1.14
MSH5O43196 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC22.18■■□□□ 1.14
MSH5O43196 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
MSH5O43196 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH5O43196 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC22.18■■□□□ 1.14
MSH5O43196 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC22.18■■□□□ 1.14
MSH5O43196 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH5O43196 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
MSH5O43196 KRT18P55-202ENST00000578578 1546 ntBASIC22.18■■□□□ 1.14
MSH5O43196 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
MSH5O43196 TPT1P10-201ENST00000312966 496 ntBASIC22.18■■□□□ 1.14
MSH5O43196 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC22.18■■□□□ 1.14
MSH5O43196 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH5O43196 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH5O43196 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
MSH5O43196 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH5O43196 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC22.18■■□□□ 1.14
MSH5O43196 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC22.18■■□□□ 1.14
MSH5O43196 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC22.18■■□□□ 1.14
MSH5O43196 CNN2P2-201ENST00000443536 909 ntBASIC22.18■■□□□ 1.14
MSH5O43196 CNN2P3-201ENST00000450201 906 ntBASIC22.18■■□□□ 1.14
MSH5O43196 NPM1P9-201ENST00000453156 844 ntBASIC22.18■■□□□ 1.14
MSH5O43196 BLNK-209ENST00000495266 440 ntTSL 5 BASIC22.18■■□□□ 1.14
MSH5O43196 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC22.18■■□□□ 1.14
MSH5O43196 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
MSH5O43196 IGHV3OR16-6-201ENST00000568775 360 ntBASIC22.18■■□□□ 1.14
MSH5O43196 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC22.18■■□□□ 1.14
MSH5O43196 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC22.18■■□□□ 1.14
MSH5O43196 Z93930.3-201ENST00000607919 749 ntBASIC22.18■■□□□ 1.14
MSH5O43196 AL136317.3-201ENST00000618497 906 ntBASIC22.18■■□□□ 1.14
MSH5O43196 AL157770.1-201ENST00000623049 439 ntBASIC22.18■■□□□ 1.14
MSH5O43196 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
MSH5O43196 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
MSH5O43196 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC22.18■■□□□ 1.14
MSH5O43196 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
MSH5O43196 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
MSH5O43196 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
MSH5O43196 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
MSH5O43196 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC22.17■■□□□ 1.14
MSH5O43196 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC22.17■■□□□ 1.14
MSH5O43196 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms