Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 CHCHD2P9-201ENST00000461726 456 ntBASIC11.99□□□□□ -0.49
COL6A5A8TX70 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
COL6A5A8TX70 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC11.99□□□□□ -0.49
COL6A5A8TX70 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
COL6A5A8TX70 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC11.99□□□□□ -0.49
COL6A5A8TX70 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC11.99□□□□□ -0.49
COL6A5A8TX70 AP005212.2-201ENST00000584979 510 ntBASIC11.99□□□□□ -0.49
COL6A5A8TX70 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC11.99□□□□□ -0.49
COL6A5A8TX70 AC107464.3-201ENST00000609172 737 ntBASIC11.99□□□□□ -0.49
COL6A5A8TX70 AL627230.2-201ENST00000613254 655 ntBASIC11.99□□□□□ -0.49
COL6A5A8TX70 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC11.99□□□□□ -0.49
COL6A5A8TX70 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
COL6A5A8TX70 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
COL6A5A8TX70 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
COL6A5A8TX70 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
COL6A5A8TX70 CROCCP2-202ENST00000412962 2773 ntBASIC11.99□□□□□ -0.49
COL6A5A8TX70 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
COL6A5A8TX70 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC11.99□□□□□ -0.49
COL6A5A8TX70 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
COL6A5A8TX70 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC11.99□□□□□ -0.49
COL6A5A8TX70 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC11.99□□□□□ -0.49
COL6A5A8TX70 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
COL6A5A8TX70 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC11.99□□□□□ -0.49
COL6A5A8TX70 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
COL6A5A8TX70 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC11.99□□□□□ -0.49
COL6A5A8TX70 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
COL6A5A8TX70 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC11.99□□□□□ -0.49
COL6A5A8TX70 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC11.99□□□□□ -0.49
COL6A5A8TX70 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC11.99□□□□□ -0.49
COL6A5A8TX70 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC11.99□□□□□ -0.49
COL6A5A8TX70 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
COL6A5A8TX70 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC11.99□□□□□ -0.49
COL6A5A8TX70 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
COL6A5A8TX70 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
COL6A5A8TX70 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
COL6A5A8TX70 FAM90A7P-201ENST00000382628 1395 ntBASIC11.98□□□□□ -0.49
COL6A5A8TX70 FAM90A23P-201ENST00000400136 1395 ntBASIC11.98□□□□□ -0.49
COL6A5A8TX70 FAM90A21P-201ENST00000510875 1396 ntBASIC11.98□□□□□ -0.49
COL6A5A8TX70 FAM90A15P-201ENST00000514465 1395 ntBASIC11.98□□□□□ -0.49
COL6A5A8TX70 FAM90A6P-201ENST00000515148 1394 ntBASIC11.98□□□□□ -0.49
COL6A5A8TX70 FAM90A16P-201ENST00000526662 1395 ntBASIC11.98□□□□□ -0.49
COL6A5A8TX70 FAM90A9P-201ENST00000527940 1395 ntBASIC11.98□□□□□ -0.49
COL6A5A8TX70 FAM90A5P-201ENST00000528738 1395 ntBASIC11.98□□□□□ -0.49
COL6A5A8TX70 FAM90A14P-201ENST00000530386 1395 ntBASIC11.98□□□□□ -0.49
COL6A5A8TX70 FAM90A13P-201ENST00000534703 1395 ntBASIC11.98□□□□□ -0.49
COL6A5A8TX70 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC11.98□□□□□ -0.49
COL6A5A8TX70 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC11.98□□□□□ -0.49
COL6A5A8TX70 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
COL6A5A8TX70 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC11.98□□□□□ -0.49
COL6A5A8TX70 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
COL6A5A8TX70 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
COL6A5A8TX70 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
COL6A5A8TX70 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
COL6A5A8TX70 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
COL6A5A8TX70 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
COL6A5A8TX70 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
COL6A5A8TX70 AL139094.1-201ENST00000405549 1188 ntBASIC11.98□□□□□ -0.49
COL6A5A8TX70 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC11.98□□□□□ -0.49
COL6A5A8TX70 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
COL6A5A8TX70 RN7SL846P-201ENST00000467429 292 ntBASIC11.98□□□□□ -0.49
COL6A5A8TX70 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
COL6A5A8TX70 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
COL6A5A8TX70 AC026803.1-201ENST00000569130 274 ntBASIC11.98□□□□□ -0.49
COL6A5A8TX70 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC11.98□□□□□ -0.49
COL6A5A8TX70 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC11.98□□□□□ -0.49
COL6A5A8TX70 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
COL6A5A8TX70 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
COL6A5A8TX70 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC11.98□□□□□ -0.49
COL6A5A8TX70 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
COL6A5A8TX70 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
COL6A5A8TX70 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC11.98□□□□□ -0.49
COL6A5A8TX70 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
COL6A5A8TX70 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
COL6A5A8TX70 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC11.98□□□□□ -0.49
COL6A5A8TX70 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
COL6A5A8TX70 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC11.98□□□□□ -0.49
COL6A5A8TX70 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
COL6A5A8TX70 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
COL6A5A8TX70 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
COL6A5A8TX70 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
COL6A5A8TX70 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
COL6A5A8TX70 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC11.98□□□□□ -0.49
COL6A5A8TX70 CHMP1AP1-201ENST00000445563 662 ntBASIC11.98□□□□□ -0.49
COL6A5A8TX70 AL135901.1-201ENST00000451812 333 ntBASIC11.98□□□□□ -0.49
COL6A5A8TX70 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC11.98□□□□□ -0.49
COL6A5A8TX70 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC11.98□□□□□ -0.49
COL6A5A8TX70 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC11.98□□□□□ -0.49
COL6A5A8TX70 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC11.98□□□□□ -0.49
COL6A5A8TX70 NAMA-206ENST00000605377 509 ntTSL 5 BASIC11.98□□□□□ -0.49
COL6A5A8TX70 AL136295.7-201ENST00000619226 1200 ntBASIC11.98□□□□□ -0.49
COL6A5A8TX70 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
COL6A5A8TX70 AC004408.2-201ENST00000623613 2777 ntBASIC11.98□□□□□ -0.49
COL6A5A8TX70 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC11.98□□□□□ -0.49
COL6A5A8TX70 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
COL6A5A8TX70 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
COL6A5A8TX70 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC11.97□□□□□ -0.49
COL6A5A8TX70 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms