Protein–RNA interactions for Protein: Q9UPM6

LHX6, LIM/homeobox protein Lhx6, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX6Q9UPM6 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.12■□□□□ 0.01
LHX6Q9UPM6 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
LHX6Q9UPM6 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LHX6Q9UPM6 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LHX6Q9UPM6 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.11■□□□□ 0.01
LHX6Q9UPM6 AL607033.1-201ENST00000623900 1599 ntBASIC15.11■□□□□ 0.01
LHX6Q9UPM6 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 CROCCP2-202ENST00000412962 2773 ntBASIC15.11■□□□□ 0.01
LHX6Q9UPM6 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 OVCH1-AS1-204ENST00000641955 5529 ntBASIC15.11■□□□□ 0.01
LHX6Q9UPM6 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 MTCYBP32-201ENST00000427945 1084 ntBASIC15.11■□□□□ 0.01
LHX6Q9UPM6 FNTAP2-201ENST00000430308 634 ntBASIC15.11■□□□□ 0.01
LHX6Q9UPM6 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 AL355864.2-201ENST00000447420 863 ntBASIC15.11■□□□□ 0.01
LHX6Q9UPM6 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 AC005534.1-201ENST00000455709 742 ntTSL 2 BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 AC098859.1-201ENST00000502915 1238 ntBASIC15.11■□□□□ 0.01
LHX6Q9UPM6 ELL2P2-201ENST00000515135 694 ntBASIC15.11■□□□□ 0.01
LHX6Q9UPM6 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 TIMM17BP1-201ENST00000545713 516 ntBASIC15.11■□□□□ 0.01
LHX6Q9UPM6 AC020656.1-201ENST00000548900 599 ntTSL 3 BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 AL157871.5-201ENST00000555212 533 ntTSL 2 BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 RARRES2P5-201ENST00000564013 466 ntBASIC15.11■□□□□ 0.01
LHX6Q9UPM6 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 AC009039.2-201ENST00000624524 529 ntBASIC15.11■□□□□ 0.01
LHX6Q9UPM6 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 GRN-222ENST00000639447 1314 ntTSL 2 BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 AL445523.1-201ENST00000451184 1362 ntBASIC15.11■□□□□ 0.01
LHX6Q9UPM6 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LHX6Q9UPM6 PP12613-201ENST00000424958 2230 ntBASIC15.11■□□□□ 0.01
LHX6Q9UPM6 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
LHX6Q9UPM6 AC092850.2-201ENST00000623821 2697 ntBASIC15.1■□□□□ 0.01
LHX6Q9UPM6 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.1■□□□□ 0.01
LHX6Q9UPM6 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LHX6Q9UPM6 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
LHX6Q9UPM6 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LHX6Q9UPM6 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC15.1■□□□□ 0.01
LHX6Q9UPM6 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LHX6Q9UPM6 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LHX6Q9UPM6 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.1■□□□□ 0.01
LHX6Q9UPM6 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
LHX6Q9UPM6 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LHX6Q9UPM6 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LHX6Q9UPM6 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC15.1■□□□□ 0.01
LHX6Q9UPM6 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LHX6Q9UPM6 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC15.1■□□□□ 0.01
LHX6Q9UPM6 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
LHX6Q9UPM6 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LHX6Q9UPM6 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
LHX6Q9UPM6 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
LHX6Q9UPM6 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LHX6Q9UPM6 AC091046.1-201ENST00000331871 207 ntBASIC15.1■□□□□ 0.01
LHX6Q9UPM6 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
LHX6Q9UPM6 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC15.1■□□□□ 0.01
LHX6Q9UPM6 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
LHX6Q9UPM6 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC15.1■□□□□ 0.01
LHX6Q9UPM6 MPV17-206ENST00000402722 827 ntTSL 3 BASIC15.1■□□□□ 0.01
LHX6Q9UPM6 AC234644.1-201ENST00000406065 370 ntBASIC15.1■□□□□ 0.01
LHX6Q9UPM6 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC15.1■□□□□ 0.01
LHX6Q9UPM6 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms