Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDH9Q9ULB4 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC16.66■□□□□ 0.26
CDH9Q9ULB4 AL442647.2-201ENST00000429864 857 ntBASIC16.66■□□□□ 0.26
CDH9Q9ULB4 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC16.66■□□□□ 0.26
CDH9Q9ULB4 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDH9Q9ULB4 AC015910.1-201ENST00000579400 975 ntBASIC16.66■□□□□ 0.26
CDH9Q9ULB4 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC16.66■□□□□ 0.26
CDH9Q9ULB4 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDH9Q9ULB4 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC16.66■□□□□ 0.26
CDH9Q9ULB4 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDH9Q9ULB4 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDH9Q9ULB4 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.66■□□□□ 0.26
CDH9Q9ULB4 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDH9Q9ULB4 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
CDH9Q9ULB4 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDH9Q9ULB4 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.66■□□□□ 0.26
CDH9Q9ULB4 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CDH9Q9ULB4 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDH9Q9ULB4 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDH9Q9ULB4 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDH9Q9ULB4 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDH9Q9ULB4 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 RN7SL752P-201ENST00000463779 287 ntBASIC16.65■□□□□ 0.26
CDH9Q9ULB4 AC011495.1-201ENST00000498085 584 ntBASIC16.65■□□□□ 0.26
CDH9Q9ULB4 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 BRI3BPP1-201ENST00000594224 787 ntBASIC16.65■□□□□ 0.26
CDH9Q9ULB4 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.65■□□□□ 0.26
CDH9Q9ULB4 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.26
CDH9Q9ULB4 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
CDH9Q9ULB4 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.26
CDH9Q9ULB4 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
CDH9Q9ULB4 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 PCDHA1-201ENST00000378133 2726 ntBASIC16.64■□□□□ 0.25
CDH9Q9ULB4 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 GALT-202ENST00000450095 1280 ntTSL 2 BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 RPL13AP25-201ENST00000484130 612 ntBASIC16.64■□□□□ 0.25
CDH9Q9ULB4 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 POLE2-203ENST00000553805 496 ntTSL 2 BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 WFDC1-204ENST00000613603 549 ntBASIC16.64■□□□□ 0.25
CDH9Q9ULB4 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
CDH9Q9ULB4 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms