Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 TSSK5P-201ENST00000423978 907 ntBASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 SSR4P1-203ENST00000599569 2260 ntBASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 AC241585.1-201ENST00000433527 519 ntBASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 AL109936.8-201ENST00000641772 604 ntBASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMC4Q9NTJ3 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 Z97205.2-201ENST00000564697 1639 ntBASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 AC073347.1-201ENST00000421633 2643 ntBASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms