Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 HNRNPA1P40-201ENST00000426371 1278 ntBASIC16.32■□□□□ 0.2
USP29Q9HBJ7 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 FAM207CP-201ENST00000443486 507 ntBASIC16.32■□□□□ 0.2
USP29Q9HBJ7 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 BANF1P1-201ENST00000553684 263 ntBASIC16.32■□□□□ 0.2
USP29Q9HBJ7 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 AC099063.4-201ENST00000641099 1602 ntBASIC16.32■□□□□ 0.2
USP29Q9HBJ7 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 AC138035.3-201ENST00000622706 2791 ntBASIC16.32■□□□□ 0.2
USP29Q9HBJ7 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.32■□□□□ 0.2
USP29Q9HBJ7 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 AC127383.1-201ENST00000444697 1800 ntBASIC16.31■□□□□ 0.2
USP29Q9HBJ7 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 SPDYE14P-201ENST00000442619 822 ntBASIC16.31■□□□□ 0.2
USP29Q9HBJ7 TERF1P3-201ENST00000505638 1227 ntBASIC16.31■□□□□ 0.2
USP29Q9HBJ7 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 ALG1L8P-201ENST00000533887 760 ntBASIC16.31■□□□□ 0.2
USP29Q9HBJ7 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 AC026979.3-201ENST00000607315 403 ntBASIC16.31■□□□□ 0.2
USP29Q9HBJ7 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP29Q9HBJ7 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
USP29Q9HBJ7 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP29Q9HBJ7 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP29Q9HBJ7 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.3■□□□□ 0.2
USP29Q9HBJ7 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
USP29Q9HBJ7 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
USP29Q9HBJ7 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP29Q9HBJ7 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP29Q9HBJ7 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP29Q9HBJ7 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP29Q9HBJ7 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
USP29Q9HBJ7 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
USP29Q9HBJ7 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP29Q9HBJ7 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP29Q9HBJ7 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP29Q9HBJ7 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP29Q9HBJ7 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP29Q9HBJ7 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.3■□□□□ 0.2
USP29Q9HBJ7 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.3■□□□□ 0.2
USP29Q9HBJ7 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.3■□□□□ 0.2
USP29Q9HBJ7 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.3■□□□□ 0.2
USP29Q9HBJ7 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
USP29Q9HBJ7 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC16.3■□□□□ 0.2
USP29Q9HBJ7 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC16.3■□□□□ 0.2
USP29Q9HBJ7 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms