Protein–RNA interactions for Protein: Q9BT76

UPK3B, Uroplakin-3b, humanhuman

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BQ9BT76 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 SPDYE17-201ENST00000412399 783 ntBASIC11.1□□□□□ -0.63
UPK3BQ9BT76 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 AGGF1P2-201ENST00000426656 2106 ntBASIC11.1□□□□□ -0.63
UPK3BQ9BT76 WDR53-203ENST00000429115 683 ntTSL 2 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 MTND6P24-201ENST00000440466 518 ntBASIC11.1□□□□□ -0.63
UPK3BQ9BT76 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 SERBP1P3-201ENST00000459980 809 ntBASIC11.1□□□□□ -0.63
UPK3BQ9BT76 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 AL079307.3-201ENST00000556114 283 ntBASIC11.1□□□□□ -0.63
UPK3BQ9BT76 GREM1-201ENST00000560677 623 ntTSL 4 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 AL133215.2-201ENST00000609242 977 ntBASIC11.1□□□□□ -0.63
UPK3BQ9BT76 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 AL590560.3-201ENST00000623350 461 ntBASIC11.1□□□□□ -0.63
UPK3BQ9BT76 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 AC087499.5-201ENST00000452760 1342 ntBASIC11.09□□□□□ -0.63
UPK3BQ9BT76 AL592424.1-201ENST00000563624 1536 ntBASIC11.09□□□□□ -0.63
UPK3BQ9BT76 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 RNF216P1-203ENST00000404404 2427 ntBASIC11.09□□□□□ -0.63
UPK3BQ9BT76 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 AC004890.2-204ENST00000481968 304 ntBASIC11.09□□□□□ -0.63
UPK3BQ9BT76 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 ZNF890P-202ENST00000530367 1156 ntBASIC11.09□□□□□ -0.63
UPK3BQ9BT76 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 MIR4745-201ENST00000577608 62 ntBASIC11.09□□□□□ -0.63
UPK3BQ9BT76 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 TEX28P1-201ENST00000613479 1221 ntBASIC11.09□□□□□ -0.63
UPK3BQ9BT76 TEX28P2-201ENST00000617764 1221 ntBASIC11.09□□□□□ -0.63
UPK3BQ9BT76 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 FAM45BP-202ENST00000592932 1624 ntBASIC11.09□□□□□ -0.63
UPK3BQ9BT76 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
UPK3BQ9BT76 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC11.08□□□□□ -0.63
UPK3BQ9BT76 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC11.08□□□□□ -0.63
UPK3BQ9BT76 CICP4-201ENST00000447359 2812 ntBASIC11.08□□□□□ -0.63
UPK3BQ9BT76 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
UPK3BQ9BT76 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
UPK3BQ9BT76 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC11.08□□□□□ -0.64
UPK3BQ9BT76 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
UPK3BQ9BT76 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
UPK3BQ9BT76 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
UPK3BQ9BT76 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 1252.2 ms