Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 AC142381.1-201ENST00000426099 345 ntBASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 AL671277.1-201ENST00000429656 993 ntBASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 AC027307.2-201ENST00000591252 911 ntBASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 TFAMP1-201ENST00000412727 736 ntBASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 KRT8P48-201ENST00000515599 1220 ntBASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 AC243562.1-201ENST00000560672 389 ntBASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 AC138035.3-201ENST00000622706 2791 ntBASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 AC105250.1-201ENST00000509378 2057 ntBASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 AL136982.4-201ENST00000437689 1740 ntBASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 AC090616.6-203ENST00000579186 1945 ntBASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM56Q9BRZ2 AC091951.1-201ENST00000512854 2465 ntBASIC16.21■□□□□ 0.18
TRIM56Q9BRZ2 BNIP3P1-202ENST00000550043 1585 ntBASIC16.21■□□□□ 0.18
TRIM56Q9BRZ2 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM56Q9BRZ2 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM56Q9BRZ2 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM56Q9BRZ2 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM56Q9BRZ2 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.18
TRIM56Q9BRZ2 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM56Q9BRZ2 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM56Q9BRZ2 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM56Q9BRZ2 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM56Q9BRZ2 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16.21■□□□□ 0.18
TRIM56Q9BRZ2 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM56Q9BRZ2 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 SPTSSB-204ENST00000617024 1292 ntBASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms