Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
NKX3-1Q99801 SLC4A1APP2-201ENST00000424054 1259 ntBASIC13.9□□□□□ -0.18
NKX3-1Q99801 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX3-1Q99801 RPL18-209ENST00000550645 463 ntTSL 5 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 RPL18-214ENST00000552588 559 ntTSL 3 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 AC018845.2-201ENST00000568326 409 ntBASIC13.9□□□□□ -0.18
NKX3-1Q99801 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX3-1Q99801 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 AL009183.1-201ENST00000603760 355 ntBASIC13.9□□□□□ -0.18
NKX3-1Q99801 AL645728.2-201ENST00000641974 660 ntBASIC13.9□□□□□ -0.18
NKX3-1Q99801 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
NKX3-1Q99801 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX3-1Q99801 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX3-1Q99801 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX3-1Q99801 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX3-1Q99801 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX3-1Q99801 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX3-1Q99801 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX3-1Q99801 AL365209.1-201ENST00000624418 6473 ntBASIC13.9□□□□□ -0.18
NKX3-1Q99801 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX3-1Q99801 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 AC023908.3-201ENST00000564211 3047 ntBASIC13.9□□□□□ -0.18
NKX3-1Q99801 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX3-1Q99801 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX3-1Q99801 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
NKX3-1Q99801 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
NKX3-1Q99801 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 AC006058.4-201ENST00000624016 1670 ntBASIC13.89□□□□□ -0.19
NKX3-1Q99801 C18orf15-201ENST00000623680 2534 ntBASIC13.89□□□□□ -0.19
NKX3-1Q99801 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC13.89□□□□□ -0.19
NKX3-1Q99801 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC13.89□□□□□ -0.19
NKX3-1Q99801 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC13.89□□□□□ -0.19
NKX3-1Q99801 PRSS29P-201ENST00000440800 595 ntBASIC13.89□□□□□ -0.19
NKX3-1Q99801 HCG4B-203ENST00000450128 991 ntBASIC13.89□□□□□ -0.19
NKX3-1Q99801 RNA5SP415-201ENST00000517246 115 ntBASIC13.89□□□□□ -0.19
NKX3-1Q99801 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC13.89□□□□□ -0.19
NKX3-1Q99801 PIN1-206ENST00000587625 878 ntTSL 2 BASIC13.89□□□□□ -0.19
NKX3-1Q99801 AL078644.1-201ENST00000609881 752 ntBASIC13.89□□□□□ -0.19
NKX3-1Q99801 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC13.89□□□□□ -0.19
NKX3-1Q99801 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
NKX3-1Q99801 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
NKX3-1Q99801 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
NKX3-1Q99801 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC13.89□□□□□ -0.19
NKX3-1Q99801 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC13.89□□□□□ -0.19
NKX3-1Q99801 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
NKX3-1Q99801 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC13.89□□□□□ -0.19
NKX3-1Q99801 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
NKX3-1Q99801 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
NKX3-1Q99801 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
NKX3-1Q99801 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC13.88□□□□□ -0.19
NKX3-1Q99801 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
NKX3-1Q99801 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC13.88□□□□□ -0.19
NKX3-1Q99801 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
NKX3-1Q99801 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC13.88□□□□□ -0.19
NKX3-1Q99801 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
NKX3-1Q99801 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
NKX3-1Q99801 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC13.88□□□□□ -0.19
NKX3-1Q99801 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC13.88□□□□□ -0.19
NKX3-1Q99801 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
NKX3-1Q99801 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
NKX3-1Q99801 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC13.88□□□□□ -0.19
NKX3-1Q99801 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 113.2 ms