Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 AC135586.1-201ENST00000539323 574 ntBASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 PRAL-201ENST00000624952 3286 ntBASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 AC236430.1-201ENST00000402231 743 ntBASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 GREM1-201ENST00000560677 623 ntTSL 4 BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 RN7SL204P-201ENST00000582831 262 ntBASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 AC025048.3-201ENST00000590609 569 ntBASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 LINC02560-201ENST00000596379 459 ntBASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 AC005702.4-201ENST00000618393 416 ntBASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 AC018892.3-201ENST00000623986 2499 ntBASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 LRRFIP1P1-201ENST00000498774 2246 ntBASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTCHD1Q96NR3 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 CASK-202ENST00000378158 3848 ntTSL 5 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms