Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
VMP1Q96GC9 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
VMP1Q96GC9 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
VMP1Q96GC9 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
VMP1Q96GC9 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
VMP1Q96GC9 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.26■□□□□ 0.03
VMP1Q96GC9 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VMP1Q96GC9 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.26■□□□□ 0.03
VMP1Q96GC9 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VMP1Q96GC9 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.26■□□□□ 0.03
VMP1Q96GC9 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
VMP1Q96GC9 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.26■□□□□ 0.03
VMP1Q96GC9 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
VMP1Q96GC9 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VMP1Q96GC9 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VMP1Q96GC9 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VMP1Q96GC9 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VMP1Q96GC9 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VMP1Q96GC9 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
VMP1Q96GC9 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC15.26■□□□□ 0.03
VMP1Q96GC9 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
VMP1Q96GC9 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.25■□□□□ 0.03
VMP1Q96GC9 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.25■□□□□ 0.03
VMP1Q96GC9 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC15.25■□□□□ 0.03
VMP1Q96GC9 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
VMP1Q96GC9 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC15.25■□□□□ 0.03
VMP1Q96GC9 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VMP1Q96GC9 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VMP1Q96GC9 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
VMP1Q96GC9 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VMP1Q96GC9 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC15.25■□□□□ 0.03
VMP1Q96GC9 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VMP1Q96GC9 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VMP1Q96GC9 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VMP1Q96GC9 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
VMP1Q96GC9 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VMP1Q96GC9 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VMP1Q96GC9 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
VMP1Q96GC9 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC15.25■□□□□ 0.03
VMP1Q96GC9 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VMP1Q96GC9 SPDYE14P-201ENST00000442619 822 ntBASIC15.25■□□□□ 0.03
VMP1Q96GC9 CNN2P2-201ENST00000443536 909 ntBASIC15.25■□□□□ 0.03
VMP1Q96GC9 FAM86GP-201ENST00000448322 971 ntBASIC15.25■□□□□ 0.03
VMP1Q96GC9 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC15.25■□□□□ 0.03
VMP1Q96GC9 CNN2P3-201ENST00000450201 906 ntBASIC15.25■□□□□ 0.03
VMP1Q96GC9 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
VMP1Q96GC9 AC067863.1-201ENST00000494933 530 ntBASIC15.25■□□□□ 0.03
VMP1Q96GC9 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.25■□□□□ 0.03
VMP1Q96GC9 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.25■□□□□ 0.03
VMP1Q96GC9 AL136317.3-201ENST00000618497 906 ntBASIC15.25■□□□□ 0.03
VMP1Q96GC9 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC15.25■□□□□ 0.03
VMP1Q96GC9 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VMP1Q96GC9 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.25■□□□□ 0.03
VMP1Q96GC9 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
VMP1Q96GC9 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
VMP1Q96GC9 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.25■□□□□ 0.03
VMP1Q96GC9 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VMP1Q96GC9 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VMP1Q96GC9 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VMP1Q96GC9 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.25■□□□□ 0.03
VMP1Q96GC9 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VMP1Q96GC9 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VMP1Q96GC9 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VMP1Q96GC9 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VMP1Q96GC9 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VMP1Q96GC9 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VMP1Q96GC9 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.25■□□□□ 0.03
VMP1Q96GC9 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.25■□□□□ 0.03
VMP1Q96GC9 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
VMP1Q96GC9 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VMP1Q96GC9 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VMP1Q96GC9 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.24■□□□□ 0.03
VMP1Q96GC9 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VMP1Q96GC9 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
VMP1Q96GC9 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VMP1Q96GC9 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VMP1Q96GC9 FOXO1B-201ENST00000504678 1527 ntBASIC15.24■□□□□ 0.03
VMP1Q96GC9 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
VMP1Q96GC9 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VMP1Q96GC9 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VMP1Q96GC9 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VMP1Q96GC9 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VMP1Q96GC9 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VMP1Q96GC9 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VMP1Q96GC9 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VMP1Q96GC9 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC15.24■□□□□ 0.03
VMP1Q96GC9 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.24■□□□□ 0.03
VMP1Q96GC9 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC15.24■□□□□ 0.03
VMP1Q96GC9 SLBP-205ENST00000488267 987 ntTSL 2 BASIC15.24■□□□□ 0.03
VMP1Q96GC9 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.24■□□□□ 0.03
VMP1Q96GC9 AC069262.1-201ENST00000539058 672 ntBASIC15.24■□□□□ 0.03
VMP1Q96GC9 VPS29-207ENST00000549970 818 ntTSL 3 BASIC15.24■□□□□ 0.03
VMP1Q96GC9 RARRES2P9-201ENST00000565168 469 ntBASIC15.24■□□□□ 0.03
VMP1Q96GC9 AC015911.4-201ENST00000588022 1070 ntBASIC15.24■□□□□ 0.03
VMP1Q96GC9 Z92544.3-201ENST00000624747 417 ntBASIC15.24■□□□□ 0.03
VMP1Q96GC9 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.24■□□□□ 0.03
VMP1Q96GC9 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VMP1Q96GC9 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VMP1Q96GC9 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
VMP1Q96GC9 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms