Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TTC28Q96AY4 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TTC28Q96AY4 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TTC28Q96AY4 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TTC28Q96AY4 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC15.66■□□□□ 0.1
TTC28Q96AY4 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC15.66■□□□□ 0.1
TTC28Q96AY4 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TTC28Q96AY4 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC15.66■□□□□ 0.1
TTC28Q96AY4 OR10B1P-201ENST00000601666 907 ntBASIC15.66■□□□□ 0.1
TTC28Q96AY4 AL358472.3-201ENST00000608147 415 ntBASIC15.66■□□□□ 0.1
TTC28Q96AY4 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.66■□□□□ 0.1
TTC28Q96AY4 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
TTC28Q96AY4 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TTC28Q96AY4 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
TTC28Q96AY4 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TTC28Q96AY4 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.66■□□□□ 0.1
TTC28Q96AY4 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC15.66■□□□□ 0.1
TTC28Q96AY4 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC15.66■□□□□ 0.1
TTC28Q96AY4 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TTC28Q96AY4 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TTC28Q96AY4 USP4-203ENST00000415188 1454 ntTSL 3 BASIC15.66■□□□□ 0.1
TTC28Q96AY4 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TTC28Q96AY4 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC15.66■□□□□ 0.1
TTC28Q96AY4 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC15.66■□□□□ 0.1
TTC28Q96AY4 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TTC28Q96AY4 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC15.66■□□□□ 0.1
TTC28Q96AY4 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC15.66■□□□□ 0.1
TTC28Q96AY4 AC124947.2-201ENST00000547118 1133 ntBASIC15.66■□□□□ 0.1
TTC28Q96AY4 AC027237.1-201ENST00000560942 655 ntBASIC15.66■□□□□ 0.1
TTC28Q96AY4 AC011471.3-201ENST00000623576 402 ntBASIC15.66■□□□□ 0.1
TTC28Q96AY4 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC15.66■□□□□ 0.1
TTC28Q96AY4 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC15.66■□□□□ 0.1
TTC28Q96AY4 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
TTC28Q96AY4 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
TTC28Q96AY4 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
TTC28Q96AY4 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC15.65■□□□□ 0.1
TTC28Q96AY4 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
TTC28Q96AY4 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
TTC28Q96AY4 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TTC28Q96AY4 MADD-208ENST00000405573 1823 ntTSL 5 BASIC15.65■□□□□ 0.1
TTC28Q96AY4 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.65■□□□□ 0.1
TTC28Q96AY4 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TTC28Q96AY4 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TTC28Q96AY4 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC15.65■□□□□ 0.1
TTC28Q96AY4 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
TTC28Q96AY4 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC15.65■□□□□ 0.1
TTC28Q96AY4 AC009093.2-201ENST00000563477 546 ntTSL 4 BASIC15.65■□□□□ 0.1
TTC28Q96AY4 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC15.65■□□□□ 0.1
TTC28Q96AY4 MIR4313-201ENST00000580760 101 ntBASIC15.65■□□□□ 0.1
TTC28Q96AY4 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC15.65■□□□□ 0.1
TTC28Q96AY4 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC15.65■□□□□ 0.1
TTC28Q96AY4 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TTC28Q96AY4 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
TTC28Q96AY4 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.65■□□□□ 0.1
TTC28Q96AY4 AC090502.4-201ENST00000551714 1386 ntBASIC15.65■□□□□ 0.1
TTC28Q96AY4 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TTC28Q96AY4 NF2-208ENST00000403435 2568 ntTSL 5 BASIC15.65■□□□□ 0.1
TTC28Q96AY4 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TTC28Q96AY4 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
TTC28Q96AY4 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TTC28Q96AY4 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
TTC28Q96AY4 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
TTC28Q96AY4 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.65■□□□□ 0.1
TTC28Q96AY4 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TTC28Q96AY4 AL603756.1-201ENST00000606511 2163 ntBASIC15.65■□□□□ 0.1
TTC28Q96AY4 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
TTC28Q96AY4 AC239868.1-201ENST00000369385 493 ntBASIC15.65■□□□□ 0.1
TTC28Q96AY4 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TTC28Q96AY4 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC15.65■□□□□ 0.1
TTC28Q96AY4 RNLS-203ENST00000437752 525 ntTSL 2 BASIC15.65■□□□□ 0.1
TTC28Q96AY4 VDAC1P1-201ENST00000439229 848 ntBASIC15.65■□□□□ 0.1
TTC28Q96AY4 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC15.65■□□□□ 0.1
TTC28Q96AY4 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC15.65■□□□□ 0.1
TTC28Q96AY4 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TTC28Q96AY4 MBP-238ENST00000580402 915 ntTSL 5 BASIC15.65■□□□□ 0.1
TTC28Q96AY4 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TTC28Q96AY4 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC15.65■□□□□ 0.1
TTC28Q96AY4 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
TTC28Q96AY4 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
TTC28Q96AY4 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.64■□□□□ 0.09
TTC28Q96AY4 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TTC28Q96AY4 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TTC28Q96AY4 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
TTC28Q96AY4 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
TTC28Q96AY4 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
TTC28Q96AY4 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.64■□□□□ 0.09
TTC28Q96AY4 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
TTC28Q96AY4 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
TTC28Q96AY4 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TTC28Q96AY4 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
TTC28Q96AY4 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC15.64■□□□□ 0.09
TTC28Q96AY4 AL354861.1-201ENST00000445213 355 ntBASIC15.64■□□□□ 0.09
TTC28Q96AY4 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC15.64■□□□□ 0.09
TTC28Q96AY4 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TTC28Q96AY4 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TTC28Q96AY4 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.64■□□□□ 0.09
TTC28Q96AY4 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TTC28Q96AY4 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.64■□□□□ 0.09
TTC28Q96AY4 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TTC28Q96AY4 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms