Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 AC005052.1-201ENST00000625181 2492 ntBASIC10.38□□□□□ -0.75
ALMS1Q8TCU4 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
ALMS1Q8TCU4 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
ALMS1Q8TCU4 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC10.38□□□□□ -0.75
ALMS1Q8TCU4 RPS15-201ENST00000233609 534 ntTSL 2 BASIC10.38□□□□□ -0.75
ALMS1Q8TCU4 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
ALMS1Q8TCU4 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC10.38□□□□□ -0.75
ALMS1Q8TCU4 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC10.38□□□□□ -0.75
ALMS1Q8TCU4 AL353637.1-201ENST00000451571 732 ntBASIC10.38□□□□□ -0.75
ALMS1Q8TCU4 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC10.38□□□□□ -0.75
ALMS1Q8TCU4 AL022344.2-201ENST00000568976 968 ntBASIC10.38□□□□□ -0.75
ALMS1Q8TCU4 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC10.38□□□□□ -0.75
ALMS1Q8TCU4 RPS15-205ENST00000586686 562 ntTSL 5 BASIC10.38□□□□□ -0.75
ALMS1Q8TCU4 AC008805.1-201ENST00000590892 364 ntBASIC10.38□□□□□ -0.75
ALMS1Q8TCU4 RPS15-208ENST00000591804 711 ntTSL 5 BASIC10.38□□□□□ -0.75
ALMS1Q8TCU4 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC10.38□□□□□ -0.75
ALMS1Q8TCU4 AC005632.3-201ENST00000605544 308 ntBASIC10.38□□□□□ -0.75
ALMS1Q8TCU4 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC10.38□□□□□ -0.75
ALMS1Q8TCU4 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC10.38□□□□□ -0.75
ALMS1Q8TCU4 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC10.38□□□□□ -0.75
ALMS1Q8TCU4 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC10.38□□□□□ -0.75
ALMS1Q8TCU4 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC10.38□□□□□ -0.75
ALMS1Q8TCU4 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC10.38□□□□□ -0.75
ALMS1Q8TCU4 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC10.38□□□□□ -0.75
ALMS1Q8TCU4 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 AC092171.5-201ENST00000608012 942 ntBASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 AMT-224ENST00000635808 1610 ntTSL 5 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 TNRC18P3-201ENST00000441896 2691 ntBASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 RBM38-204ENST00000371219 760 ntTSL 2 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 OR2K2-202ENST00000374428 1038 ntBASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 DNAJB1P1-201ENST00000429417 1024 ntBASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 HKR1-225ENST00000592168 566 ntTSL 4 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 AC103691.2-201ENST00000618824 433 ntBASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 KRT8P29-201ENST00000420409 1371 ntBASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 AC080080.1-201ENST00000625121 2420 ntBASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 AMT-204ENST00000427987 1646 ntTSL 5 BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
ALMS1Q8TCU4 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
ALMS1Q8TCU4 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
ALMS1Q8TCU4 MIR6858-201ENST00000620733 67 ntBASIC10.36□□□□□ -0.75
ALMS1Q8TCU4 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC10.36□□□□□ -0.75
ALMS1Q8TCU4 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC10.36□□□□□ -0.75
ALMS1Q8TCU4 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC10.36□□□□□ -0.75
ALMS1Q8TCU4 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
ALMS1Q8TCU4 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
ALMS1Q8TCU4 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC10.36□□□□□ -0.75
ALMS1Q8TCU4 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC10.36□□□□□ -0.75
ALMS1Q8TCU4 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
ALMS1Q8TCU4 AP001094.4-201ENST00000579008 2176 ntBASIC10.36□□□□□ -0.75
ALMS1Q8TCU4 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC10.36□□□□□ -0.75
ALMS1Q8TCU4 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC10.36□□□□□ -0.75
ALMS1Q8TCU4 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC10.36□□□□□ -0.75
ALMS1Q8TCU4 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms