Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC58Q4VC31 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
CCDC58Q4VC31 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC58Q4VC31 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC14.25□□□□□ -0.13
CCDC58Q4VC31 API5-202ENST00000420461 2009 ntTSL 2 BASIC14.25□□□□□ -0.13
CCDC58Q4VC31 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC58Q4VC31 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC14.25□□□□□ -0.13
CCDC58Q4VC31 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC58Q4VC31 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CCDC58Q4VC31 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC58Q4VC31 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC58Q4VC31 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC58Q4VC31 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CCDC58Q4VC31 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC58Q4VC31 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC58Q4VC31 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC58Q4VC31 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.25□□□□□ -0.13
CCDC58Q4VC31 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
CCDC58Q4VC31 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC58Q4VC31 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 AC097376.2-205ENST00000610159 5334 ntBASIC14.24□□□□□ -0.13
CCDC58Q4VC31 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 OR2I1P-210ENST00000642037 4691 ntBASIC14.24□□□□□ -0.13
CCDC58Q4VC31 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.24□□□□□ -0.13
CCDC58Q4VC31 AC090616.6-203ENST00000579186 1945 ntBASIC14.24□□□□□ -0.13
CCDC58Q4VC31 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 ATP6V0CP3-201ENST00000417255 467 ntBASIC14.24□□□□□ -0.13
CCDC58Q4VC31 TSPY19P-201ENST00000418461 509 ntBASIC14.24□□□□□ -0.13
CCDC58Q4VC31 TSPY18P-201ENST00000441642 509 ntBASIC14.24□□□□□ -0.13
CCDC58Q4VC31 SAPCD2P3-201ENST00000455031 850 ntBASIC14.24□□□□□ -0.13
CCDC58Q4VC31 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 EHF-205ENST00000527935 557 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 OR7E14P-202ENST00000530490 1290 ntBASIC14.24□□□□□ -0.13
CCDC58Q4VC31 AC091304.2-201ENST00000564639 760 ntBASIC14.24□□□□□ -0.13
CCDC58Q4VC31 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 AL031432.2-201ENST00000566714 459 ntBASIC14.24□□□□□ -0.13
CCDC58Q4VC31 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 AL928711.1-201ENST00000570165 459 ntBASIC14.24□□□□□ -0.13
CCDC58Q4VC31 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 MIR3652-201ENST00000579335 131 ntBASIC14.24□□□□□ -0.13
CCDC58Q4VC31 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 CYB561-216ENST00000582297 897 ntTSL 3 BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC58Q4VC31 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms