Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 GCK-202ENST00000345378 2421 ntTSL 2 BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.26■□□□□ 0.03
COL28A1Q2UY09 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 AL136379.1-201ENST00000623471 2642 ntBASIC15.26■□□□□ 0.03
COL28A1Q2UY09 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 GGCT-203ENST00000409144 836 ntTSL 2 BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 WDR53-204ENST00000433160 887 ntTSL 5 BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 AC104596.2-201ENST00000512793 793 ntBASIC15.26■□□□□ 0.03
COL28A1Q2UY09 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.26■□□□□ 0.03
COL28A1Q2UY09 RPSAP52-203ENST00000622976 1023 ntBASIC15.26■□□□□ 0.03
COL28A1Q2UY09 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 BANP-204ENST00000393208 2283 ntTSL 2 BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 HYMAI-201ENST00000635591 3347 ntBASIC15.25■□□□□ 0.03
COL28A1Q2UY09 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 AC092171.3-201ENST00000610122 2651 ntBASIC15.25■□□□□ 0.03
COL28A1Q2UY09 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 LDHBP1-201ENST00000455730 1119 ntBASIC15.25■□□□□ 0.03
COL28A1Q2UY09 MBP-227ENST00000526111 581 ntTSL 4 BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 RRP7BP-205ENST00000566851 833 ntBASIC15.25■□□□□ 0.03
COL28A1Q2UY09 AC010328.2-201ENST00000597698 1111 ntBASIC15.25■□□□□ 0.03
COL28A1Q2UY09 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 AL118558.3-201ENST00000607414 1079 ntBASIC15.25■□□□□ 0.03
COL28A1Q2UY09 AL022328.1-201ENST00000610050 478 ntBASIC15.25■□□□□ 0.03
COL28A1Q2UY09 AC091271.1-201ENST00000611877 1162 ntBASIC15.25■□□□□ 0.03
COL28A1Q2UY09 AC015967.2-201ENST00000624092 234 ntBASIC15.25■□□□□ 0.03
COL28A1Q2UY09 AC006435.4-201ENST00000625037 234 ntBASIC15.25■□□□□ 0.03
COL28A1Q2UY09 AL356737.1-201ENST00000634391 234 ntBASIC15.25■□□□□ 0.03
COL28A1Q2UY09 AL033527.5-202ENST00000641632 1098 ntBASIC15.25■□□□□ 0.03
COL28A1Q2UY09 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.25■□□□□ 0.03
COL28A1Q2UY09 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms