Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
HSPG2P98160 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
HSPG2P98160 MBLAC2-202ENST00000514906 1936 ntBASIC9.51□□□□□ -0.89
HSPG2P98160 RPL8P2-201ENST00000430538 502 ntBASIC9.51□□□□□ -0.89
HSPG2P98160 SERBP1P2-201ENST00000436888 1164 ntBASIC9.51□□□□□ -0.89
HSPG2P98160 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC9.51□□□□□ -0.89
HSPG2P98160 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC9.51□□□□□ -0.89
HSPG2P98160 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC9.51□□□□□ -0.89
HSPG2P98160 AC008805.1-201ENST00000590892 364 ntBASIC9.51□□□□□ -0.89
HSPG2P98160 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC9.51□□□□□ -0.89
HSPG2P98160 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC9.51□□□□□ -0.89
HSPG2P98160 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC9.51□□□□□ -0.89
HSPG2P98160 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC9.51□□□□□ -0.89
HSPG2P98160 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
HSPG2P98160 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC9.51□□□□□ -0.89
HSPG2P98160 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC9.51□□□□□ -0.89
HSPG2P98160 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
HSPG2P98160 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
HSPG2P98160 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
HSPG2P98160 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC9.5□□□□□ -0.89
HSPG2P98160 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
HSPG2P98160 KRT8P14-201ENST00000414254 1442 ntBASIC9.5□□□□□ -0.89
HSPG2P98160 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC9.5□□□□□ -0.89
HSPG2P98160 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC9.5□□□□□ -0.89
HSPG2P98160 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
HSPG2P98160 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
HSPG2P98160 B9D1-203ENST00000395615 805 ntTSL 3 BASIC9.5□□□□□ -0.89
HSPG2P98160 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC9.5□□□□□ -0.89
HSPG2P98160 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC9.5□□□□□ -0.89
HSPG2P98160 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC9.5□□□□□ -0.89
HSPG2P98160 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC9.5□□□□□ -0.89
HSPG2P98160 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC9.5□□□□□ -0.89
HSPG2P98160 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
HSPG2P98160 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
HSPG2P98160 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
HSPG2P98160 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC9.5□□□□□ -0.89
HSPG2P98160 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
HSPG2P98160 AC018695.7-201ENST00000624587 2492 ntBASIC9.5□□□□□ -0.89
HSPG2P98160 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC9.5□□□□□ -0.89
HSPG2P98160 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC9.5□□□□□ -0.89
HSPG2P98160 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC9.5□□□□□ -0.89
HSPG2P98160 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
HSPG2P98160 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC9.5□□□□□ -0.89
HSPG2P98160 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
HSPG2P98160 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC9.5□□□□□ -0.89
HSPG2P98160 TP53-221ENST00000615910 1149 ntTSL 5 BASIC9.5□□□□□ -0.89
HSPG2P98160 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC9.5□□□□□ -0.89
HSPG2P98160 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
HSPG2P98160 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC9.5□□□□□ -0.89
HSPG2P98160 AC011840.2-201ENST00000563063 1520 ntBASIC9.5□□□□□ -0.89
HSPG2P98160 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
HSPG2P98160 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC9.5□□□□□ -0.89
HSPG2P98160 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
HSPG2P98160 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC9.5□□□□□ -0.89
HSPG2P98160 USP4-203ENST00000415188 1454 ntTSL 3 BASIC9.5□□□□□ -0.89
HSPG2P98160 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC9.5□□□□□ -0.89
HSPG2P98160 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
HSPG2P98160 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
HSPG2P98160 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC9.5□□□□□ -0.89
HSPG2P98160 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
HSPG2P98160 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
HSPG2P98160 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC9.5□□□□□ -0.89
HSPG2P98160 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC9.5□□□□□ -0.89
HSPG2P98160 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC9.5□□□□□ -0.89
HSPG2P98160 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC9.5□□□□□ -0.89
HSPG2P98160 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC9.5□□□□□ -0.89
HSPG2P98160 AC090857.1-201ENST00000527400 390 ntBASIC9.5□□□□□ -0.89
HSPG2P98160 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC9.5□□□□□ -0.89
HSPG2P98160 CR383656.3-201ENST00000551315 183 ntBASIC9.5□□□□□ -0.89
HSPG2P98160 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC9.5□□□□□ -0.89
HSPG2P98160 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC9.5□□□□□ -0.89
HSPG2P98160 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC9.5□□□□□ -0.89
HSPG2P98160 CMC2-224ENST00000630396 481 ntTSL 5 BASIC9.5□□□□□ -0.89
HSPG2P98160 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC9.5□□□□□ -0.89
HSPG2P98160 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC9.5□□□□□ -0.89
HSPG2P98160 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC9.5□□□□□ -0.89
HSPG2P98160 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
HSPG2P98160 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC9.5□□□□□ -0.89
HSPG2P98160 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC9.5□□□□□ -0.89
HSPG2P98160 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
HSPG2P98160 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC9.5□□□□□ -0.89
HSPG2P98160 AL158070.2-201ENST00000623713 1621 ntBASIC9.5□□□□□ -0.89
HSPG2P98160 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC9.5□□□□□ -0.89
HSPG2P98160 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
HSPG2P98160 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
HSPG2P98160 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC9.5□□□□□ -0.89
HSPG2P98160 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
HSPG2P98160 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
HSPG2P98160 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC9.49□□□□□ -0.89
HSPG2P98160 AL139094.1-201ENST00000405549 1188 ntBASIC9.49□□□□□ -0.89
HSPG2P98160 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
HSPG2P98160 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC9.49□□□□□ -0.89
HSPG2P98160 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC9.49□□□□□ -0.89
HSPG2P98160 AC011247.3-201ENST00000603297 438 ntBASIC9.49□□□□□ -0.89
HSPG2P98160 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC9.49□□□□□ -0.89
HSPG2P98160 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
HSPG2P98160 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC9.49□□□□□ -0.89
HSPG2P98160 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC9.49□□□□□ -0.89
HSPG2P98160 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC9.49□□□□□ -0.89
HSPG2P98160 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms