Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
LIG3P49916 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIG3P49916 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
LIG3P49916 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIG3P49916 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC16.74■□□□□ 0.27
LIG3P49916 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC16.74■□□□□ 0.27
LIG3P49916 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIG3P49916 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIG3P49916 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC16.74■□□□□ 0.27
LIG3P49916 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
LIG3P49916 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.74■□□□□ 0.27
LIG3P49916 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIG3P49916 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.74■□□□□ 0.27
LIG3P49916 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.74■□□□□ 0.27
LIG3P49916 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.74■□□□□ 0.27
LIG3P49916 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIG3P49916 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIG3P49916 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIG3P49916 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIG3P49916 AL355306.1-201ENST00000415580 579 ntBASIC16.74■□□□□ 0.27
LIG3P49916 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC16.74■□□□□ 0.27
LIG3P49916 CNN2P11-201ENST00000429351 262 ntBASIC16.74■□□□□ 0.27
LIG3P49916 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
LIG3P49916 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIG3P49916 AC109635.5-201ENST00000533593 962 ntBASIC16.74■□□□□ 0.27
LIG3P49916 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
LIG3P49916 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
LIG3P49916 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
LIG3P49916 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.74■□□□□ 0.27
LIG3P49916 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
LIG3P49916 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIG3P49916 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC16.74■□□□□ 0.27
LIG3P49916 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIG3P49916 AC007191.1-201ENST00000623179 2995 ntBASIC16.74■□□□□ 0.27
LIG3P49916 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.74■□□□□ 0.27
LIG3P49916 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIG3P49916 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIG3P49916 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIG3P49916 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIG3P49916 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIG3P49916 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIG3P49916 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIG3P49916 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIG3P49916 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
LIG3P49916 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIG3P49916 AC006277.1-201ENST00000624348 1610 ntBASIC16.74■□□□□ 0.27
LIG3P49916 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIG3P49916 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.73■□□□□ 0.27
LIG3P49916 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIG3P49916 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
LIG3P49916 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIG3P49916 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC16.73■□□□□ 0.27
LIG3P49916 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
LIG3P49916 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIG3P49916 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
LIG3P49916 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIG3P49916 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIG3P49916 PMS2P4-201ENST00000412466 1052 ntBASIC16.73■□□□□ 0.27
LIG3P49916 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
LIG3P49916 AC092474.2-201ENST00000424288 719 ntBASIC16.73■□□□□ 0.27
LIG3P49916 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIG3P49916 ADH5P3-201ENST00000433842 1137 ntBASIC16.73■□□□□ 0.27
LIG3P49916 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIG3P49916 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIG3P49916 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.73■□□□□ 0.27
LIG3P49916 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIG3P49916 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
LIG3P49916 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIG3P49916 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.73■□□□□ 0.27
LIG3P49916 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.73■□□□□ 0.27
LIG3P49916 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.73■□□□□ 0.27
LIG3P49916 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.73■□□□□ 0.27
LIG3P49916 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.73■□□□□ 0.27
LIG3P49916 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.73■□□□□ 0.27
LIG3P49916 AL161645.1-201ENST00000622716 1255 ntBASIC16.73■□□□□ 0.27
LIG3P49916 AC105339.1-204ENST00000636249 355 ntBASIC16.73■□□□□ 0.27
LIG3P49916 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.73■□□□□ 0.27
LIG3P49916 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
LIG3P49916 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIG3P49916 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC16.73■□□□□ 0.27
LIG3P49916 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.73■□□□□ 0.27
LIG3P49916 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIG3P49916 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIG3P49916 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIG3P49916 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIG3P49916 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIG3P49916 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIG3P49916 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIG3P49916 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIG3P49916 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIG3P49916 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIG3P49916 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIG3P49916 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIG3P49916 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIG3P49916 PTENP1-202ENST00000532280 3996 ntBASIC16.72■□□□□ 0.27
LIG3P49916 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.72■□□□□ 0.27
LIG3P49916 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
LIG3P49916 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.72■□□□□ 0.27
LIG3P49916 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIG3P49916 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms