Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CTCFP49711 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTCFP49711 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTCFP49711 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTCFP49711 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTCFP49711 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CTCFP49711 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTCFP49711 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC18.22■□□□□ 0.51
CTCFP49711 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.22■□□□□ 0.51
CTCFP49711 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC18.22■□□□□ 0.51
CTCFP49711 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC18.22■□□□□ 0.51
CTCFP49711 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC18.22■□□□□ 0.51
CTCFP49711 IFT20-206ENST00000578122 834 ntTSL 2 BASIC18.22■□□□□ 0.51
CTCFP49711 IFT20-208ENST00000578985 831 ntTSL 3 BASIC18.22■□□□□ 0.51
CTCFP49711 AC103691.2-201ENST00000618824 433 ntBASIC18.22■□□□□ 0.51
CTCFP49711 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC18.22■□□□□ 0.51
CTCFP49711 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.22■□□□□ 0.51
CTCFP49711 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CTCFP49711 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
CTCFP49711 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTCFP49711 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
CTCFP49711 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTCFP49711 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTCFP49711 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CTCFP49711 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTCFP49711 AL136982.4-201ENST00000437689 1740 ntBASIC18.21■□□□□ 0.51
CTCFP49711 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
CTCFP49711 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTCFP49711 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CTCFP49711 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
CTCFP49711 TOMM22P5-201ENST00000416399 439 ntBASIC18.21■□□□□ 0.51
CTCFP49711 PFN2-202ENST00000423691 911 ntTSL 2 BASIC18.21■□□□□ 0.51
CTCFP49711 AC011742.3-201ENST00000439053 820 ntBASIC18.21■□□□□ 0.51
CTCFP49711 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC18.21■□□□□ 0.51
CTCFP49711 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CTCFP49711 AC022217.1-201ENST00000521069 738 ntBASIC18.21■□□□□ 0.51
CTCFP49711 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTCFP49711 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC18.21■□□□□ 0.51
CTCFP49711 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC18.21■□□□□ 0.51
CTCFP49711 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
CTCFP49711 AL645939.5-201ENST00000606834 243 ntBASIC18.21■□□□□ 0.51
CTCFP49711 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC18.21■□□□□ 0.51
CTCFP49711 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC18.21■□□□□ 0.51
CTCFP49711 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTCFP49711 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTCFP49711 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTCFP49711 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTCFP49711 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
CTCFP49711 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTCFP49711 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
CTCFP49711 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.21■□□□□ 0.51
CTCFP49711 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC18.21■□□□□ 0.51
CTCFP49711 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC18.21■□□□□ 0.51
CTCFP49711 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CTCFP49711 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTCFP49711 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
CTCFP49711 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.21■□□□□ 0.5
CTCFP49711 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
CTCFP49711 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.21■□□□□ 0.5
CTCFP49711 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CTCFP49711 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTCFP49711 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTCFP49711 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTCFP49711 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC18.2■□□□□ 0.5
CTCFP49711 FRMD8P1-201ENST00000440433 1524 ntBASIC18.2■□□□□ 0.5
CTCFP49711 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTCFP49711 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTCFP49711 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTCFP49711 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTCFP49711 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC18.2■□□□□ 0.5
CTCFP49711 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CTCFP49711 PGGT1BP2-201ENST00000398621 1028 ntBASIC18.2■□□□□ 0.5
CTCFP49711 DNAJB1P1-201ENST00000429417 1024 ntBASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms