Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC092384.3-202ENST00000564646 2873 ntBASIC16.43■□□□□ 0.22
PTPN9P43378 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN9P43378 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN9P43378 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.43■□□□□ 0.22
PTPN9P43378 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
PTPN9P43378 BTBD7P1-201ENST00000447253 1453 ntBASIC16.42■□□□□ 0.22
PTPN9P43378 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
PTPN9P43378 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC16.42■□□□□ 0.22
PTPN9P43378 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN9P43378 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN9P43378 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN9P43378 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC16.42■□□□□ 0.22
PTPN9P43378 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN9P43378 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN9P43378 TOMM22P5-201ENST00000416399 439 ntBASIC16.42■□□□□ 0.22
PTPN9P43378 KRT18P64-201ENST00000434946 1219 ntBASIC16.42■□□□□ 0.22
PTPN9P43378 AC114501.2-201ENST00000439631 535 ntBASIC16.42■□□□□ 0.22
PTPN9P43378 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC16.42■□□□□ 0.22
PTPN9P43378 CYMP-203ENST00000474680 1263 ntBASIC16.42■□□□□ 0.22
PTPN9P43378 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16.42■□□□□ 0.22
PTPN9P43378 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC16.42■□□□□ 0.22
PTPN9P43378 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
PTPN9P43378 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC16.42■□□□□ 0.22
PTPN9P43378 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC16.42■□□□□ 0.22
PTPN9P43378 AC009407.1-201ENST00000568958 598 ntBASIC16.42■□□□□ 0.22
PTPN9P43378 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.42■□□□□ 0.22
PTPN9P43378 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.42■□□□□ 0.22
PTPN9P43378 LINC01115-203ENST00000606068 577 ntBASIC16.42■□□□□ 0.22
PTPN9P43378 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN9P43378 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN9P43378 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN9P43378 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN9P43378 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN9P43378 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
PTPN9P43378 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN9P43378 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16.42■□□□□ 0.22
PTPN9P43378 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN9P43378 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN9P43378 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN9P43378 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN9P43378 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.42■□□□□ 0.22
PTPN9P43378 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN9P43378 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.42■□□□□ 0.22
PTPN9P43378 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
PTPN9P43378 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.42■□□□□ 0.22
PTPN9P43378 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.42■□□□□ 0.22
PTPN9P43378 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN9P43378 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN9P43378 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC16.41■□□□□ 0.22
PTPN9P43378 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
PTPN9P43378 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
PTPN9P43378 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC16.41■□□□□ 0.22
PTPN9P43378 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.41■□□□□ 0.22
PTPN9P43378 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16.41■□□□□ 0.22
PTPN9P43378 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN9P43378 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC16.41■□□□□ 0.22
PTPN9P43378 PPT1-215ENST00000641471 2368 ntBASIC16.41■□□□□ 0.22
PTPN9P43378 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN9P43378 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC16.41■□□□□ 0.22
PTPN9P43378 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN9P43378 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN9P43378 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN9P43378 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN9P43378 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN9P43378 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.41■□□□□ 0.22
PTPN9P43378 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.41■□□□□ 0.22
PTPN9P43378 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.41■□□□□ 0.22
PTPN9P43378 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.41■□□□□ 0.22
PTPN9P43378 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC16.41■□□□□ 0.22
PTPN9P43378 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
PTPN9P43378 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.41■□□□□ 0.22
PTPN9P43378 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.41■□□□□ 0.22
PTPN9P43378 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16.41■□□□□ 0.22
PTPN9P43378 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN9P43378 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC16.41■□□□□ 0.22
PTPN9P43378 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16.41■□□□□ 0.22
PTPN9P43378 AC005498.2-205ENST00000593218 784 ntBASIC16.41■□□□□ 0.22
PTPN9P43378 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.41■□□□□ 0.22
PTPN9P43378 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
PTPN9P43378 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN9P43378 DEK-201ENST00000244776 1441 ntTSL 2 BASIC16.41■□□□□ 0.22
PTPN9P43378 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.41■□□□□ 0.22
PTPN9P43378 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN9P43378 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN9P43378 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN9P43378 STK33-217ENST00000534493 1895 ntTSL 2 BASIC16.41■□□□□ 0.22
PTPN9P43378 MST1L-201ENST00000442552 2185 ntBASIC16.41■□□□□ 0.22
PTPN9P43378 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC16.41■□□□□ 0.22
PTPN9P43378 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN9P43378 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN9P43378 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC16.41■□□□□ 0.22
PTPN9P43378 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN9P43378 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
PTPN9P43378 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.41■□□□□ 0.22
PTPN9P43378 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
PTPN9P43378 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.4■□□□□ 0.22
PTPN9P43378 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN9P43378 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN9P43378 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN9P43378 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms