Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
HNF4AP41235 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HNF4AP41235 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.42■□□□□ 0.06
HNF4AP41235 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
HNF4AP41235 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
HNF4AP41235 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
HNF4AP41235 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.42■□□□□ 0.06
HNF4AP41235 KRT8P37-201ENST00000451609 1420 ntBASIC15.42■□□□□ 0.06
HNF4AP41235 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HNF4AP41235 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
HNF4AP41235 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
HNF4AP41235 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC15.42■□□□□ 0.06
HNF4AP41235 KRT18P28-201ENST00000453838 1332 ntBASIC15.42■□□□□ 0.06
HNF4AP41235 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HNF4AP41235 AC104640.1-201ENST00000562617 2109 ntBASIC15.41■□□□□ 0.06
HNF4AP41235 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HNF4AP41235 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HNF4AP41235 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.41■□□□□ 0.06
HNF4AP41235 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.41■□□□□ 0.06
HNF4AP41235 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HNF4AP41235 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HNF4AP41235 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.41■□□□□ 0.06
HNF4AP41235 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
HNF4AP41235 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
HNF4AP41235 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
HNF4AP41235 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HNF4AP41235 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HNF4AP41235 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HNF4AP41235 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
HNF4AP41235 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HNF4AP41235 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.41■□□□□ 0.06
HNF4AP41235 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC15.41■□□□□ 0.06
HNF4AP41235 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC15.41■□□□□ 0.06
HNF4AP41235 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC15.41■□□□□ 0.06
HNF4AP41235 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.41■□□□□ 0.06
HNF4AP41235 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.41■□□□□ 0.06
HNF4AP41235 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HNF4AP41235 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
HNF4AP41235 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HNF4AP41235 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
HNF4AP41235 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HNF4AP41235 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
HNF4AP41235 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HNF4AP41235 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
HNF4AP41235 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.41■□□□□ 0.06
HNF4AP41235 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HNF4AP41235 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HNF4AP41235 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
HNF4AP41235 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HNF4AP41235 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HNF4AP41235 AL161772.1-201ENST00000610494 4412 ntBASIC15.41■□□□□ 0.06
HNF4AP41235 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.41■□□□□ 0.06
HNF4AP41235 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
HNF4AP41235 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HNF4AP41235 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HNF4AP41235 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC15.4■□□□□ 0.06
HNF4AP41235 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HNF4AP41235 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HNF4AP41235 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
HNF4AP41235 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HNF4AP41235 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.4■□□□□ 0.06
HNF4AP41235 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HNF4AP41235 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
HNF4AP41235 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HNF4AP41235 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
HNF4AP41235 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
HNF4AP41235 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC15.4■□□□□ 0.06
HNF4AP41235 HLA-J-203ENST00000494367 1087 ntBASIC15.4■□□□□ 0.06
HNF4AP41235 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC15.4■□□□□ 0.06
HNF4AP41235 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC15.4■□□□□ 0.06
HNF4AP41235 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC15.4■□□□□ 0.06
HNF4AP41235 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HNF4AP41235 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HNF4AP41235 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HNF4AP41235 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
HNF4AP41235 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
HNF4AP41235 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HNF4AP41235 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
HNF4AP41235 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HNF4AP41235 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
HNF4AP41235 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HNF4AP41235 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.4■□□□□ 0.06
HNF4AP41235 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
HNF4AP41235 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HNF4AP41235 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.4■□□□□ 0.06
HNF4AP41235 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HNF4AP41235 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HNF4AP41235 AC022532.1-201ENST00000624563 1728 ntBASIC15.4■□□□□ 0.06
HNF4AP41235 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HNF4AP41235 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
HNF4AP41235 AC020658.6-201ENST00000623564 1870 ntBASIC15.4■□□□□ 0.06
HNF4AP41235 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HNF4AP41235 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HNF4AP41235 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.39■□□□□ 0.05
HNF4AP41235 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HNF4AP41235 AC099063.4-201ENST00000641099 1602 ntBASIC15.39■□□□□ 0.05
HNF4AP41235 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
HNF4AP41235 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HNF4AP41235 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.39■□□□□ 0.05
HNF4AP41235 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms