Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SATB1-217ENST00000493952 626 ntTSL 3 BASIC14.97□□□□□ -0.01
SOX3P41225 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC14.97□□□□□ -0.01
SOX3P41225 BANF1P1-201ENST00000553684 263 ntBASIC14.97□□□□□ -0.01
SOX3P41225 AC105021.1-202ENST00000570572 669 ntBASIC14.97□□□□□ -0.01
SOX3P41225 LITAF-210ENST00000571976 548 ntTSL 2 BASIC14.97□□□□□ -0.01
SOX3P41225 LITAF-214ENST00000574703 486 ntTSL 2 BASIC14.97□□□□□ -0.01
SOX3P41225 AC073592.8-201ENST00000624126 511 ntBASIC14.97□□□□□ -0.01
SOX3P41225 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.97□□□□□ -0.01
SOX3P41225 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
SOX3P41225 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC14.97□□□□□ -0.01
SOX3P41225 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC14.97□□□□□ -0.01
SOX3P41225 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC14.97□□□□□ -0.01
SOX3P41225 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
SOX3P41225 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SOX3P41225 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
SOX3P41225 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC14.97□□□□□ -0.01
SOX3P41225 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC14.97□□□□□ -0.01
SOX3P41225 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SOX3P41225 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC14.97□□□□□ -0.01
SOX3P41225 AL035456.1-201ENST00000456064 1369 ntBASIC14.97□□□□□ -0.01
SOX3P41225 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SOX3P41225 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC14.97□□□□□ -0.01
SOX3P41225 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC14.97□□□□□ -0.01
SOX3P41225 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.97□□□□□ -0.01
SOX3P41225 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
SOX3P41225 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
SOX3P41225 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
SOX3P41225 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC14.96□□□□□ -0.01
SOX3P41225 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
SOX3P41225 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC14.96□□□□□ -0.01
SOX3P41225 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC14.96□□□□□ -0.01
SOX3P41225 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
SOX3P41225 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SOX3P41225 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
SOX3P41225 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
SOX3P41225 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SOX3P41225 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC14.96□□□□□ -0.01
SOX3P41225 BASP1P1-201ENST00000430708 665 ntBASIC14.96□□□□□ -0.01
SOX3P41225 AC092580.3-201ENST00000430932 139 ntBASIC14.96□□□□□ -0.01
SOX3P41225 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.96□□□□□ -0.01
SOX3P41225 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.96□□□□□ -0.01
SOX3P41225 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC14.96□□□□□ -0.01
SOX3P41225 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC14.96□□□□□ -0.01
SOX3P41225 SPCS2P1-201ENST00000561636 679 ntBASIC14.96□□□□□ -0.01
SOX3P41225 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC14.96□□□□□ -0.01
SOX3P41225 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC14.96□□□□□ -0.01
SOX3P41225 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SOX3P41225 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
SOX3P41225 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SOX3P41225 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC14.96□□□□□ -0.01
SOX3P41225 RN7SL828P-201ENST00000607615 303 ntBASIC14.96□□□□□ -0.01
SOX3P41225 SPDYE12P-201ENST00000618416 771 ntBASIC14.96□□□□□ -0.01
SOX3P41225 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC14.96□□□□□ -0.01
SOX3P41225 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC14.96□□□□□ -0.01
SOX3P41225 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SOX3P41225 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SOX3P41225 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SOX3P41225 PPT1-215ENST00000641471 2368 ntBASIC14.96□□□□□ -0.02
SOX3P41225 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
SOX3P41225 AC099063.4-201ENST00000641099 1602 ntBASIC14.95□□□□□ -0.02
SOX3P41225 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX3P41225 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX3P41225 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX3P41225 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX3P41225 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SOX3P41225 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX3P41225 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC14.95□□□□□ -0.02
SOX3P41225 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX3P41225 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC14.95□□□□□ -0.02
SOX3P41225 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC14.95□□□□□ -0.02
SOX3P41225 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX3P41225 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX3P41225 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX3P41225 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX3P41225 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX3P41225 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.95□□□□□ -0.02
SOX3P41225 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC14.95□□□□□ -0.02
SOX3P41225 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
SOX3P41225 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC14.95□□□□□ -0.02
SOX3P41225 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX3P41225 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX3P41225 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.95□□□□□ -0.02
SOX3P41225 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX3P41225 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC14.95□□□□□ -0.02
SOX3P41225 BCRP1-201ENST00000444246 691 ntBASIC14.95□□□□□ -0.02
SOX3P41225 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SOX3P41225 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SOX3P41225 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC14.95□□□□□ -0.02
SOX3P41225 AC027369.6-201ENST00000525520 931 ntBASIC14.95□□□□□ -0.02
SOX3P41225 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.95□□□□□ -0.02
SOX3P41225 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC14.95□□□□□ -0.02
SOX3P41225 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.95□□□□□ -0.02
SOX3P41225 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
SOX3P41225 NAA38-207ENST00000576861 556 ntTSL 3 BASIC14.95□□□□□ -0.02
SOX3P41225 AL365330.1-201ENST00000607459 531 ntBASIC14.95□□□□□ -0.02
SOX3P41225 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX3P41225 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX3P41225 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
SOX3P41225 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX3P41225 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms