Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC9P31274 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC9P31274 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
HOXC9P31274 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC9P31274 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC9P31274 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC9P31274 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC20.7■□□□□ 0.9
HOXC9P31274 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC20.7■□□□□ 0.9
HOXC9P31274 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC9P31274 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC9P31274 PCDH8P1-201ENST00000428983 2773 ntBASIC20.69■□□□□ 0.9
HOXC9P31274 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC9P31274 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC9P31274 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
HOXC9P31274 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC9P31274 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC9P31274 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC9P31274 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC9P31274 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC9P31274 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC9P31274 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
HOXC9P31274 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
HOXC9P31274 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
HOXC9P31274 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC20.69■□□□□ 0.9
HOXC9P31274 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC20.69■□□□□ 0.9
HOXC9P31274 Z93015.1-201ENST00000451718 390 ntBASIC20.69■□□□□ 0.9
HOXC9P31274 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
HOXC9P31274 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC20.69■□□□□ 0.9
HOXC9P31274 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
HOXC9P31274 ACR-203ENST00000529621 708 ntTSL 5 BASIC20.69■□□□□ 0.9
HOXC9P31274 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC20.69■□□□□ 0.9
HOXC9P31274 ECM1P1-201ENST00000604092 1279 ntBASIC20.69■□□□□ 0.9
HOXC9P31274 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC20.69■□□□□ 0.9
HOXC9P31274 PRSS30P-206ENST00000641773 873 ntBASIC20.69■□□□□ 0.9
HOXC9P31274 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC9P31274 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC9P31274 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC20.69■□□□□ 0.9
HOXC9P31274 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC9P31274 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC9P31274 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC20.69■□□□□ 0.9
HOXC9P31274 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC9P31274 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC9P31274 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
HOXC9P31274 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC9P31274 TKT-202ENST00000423516 2075 ntTSL 2 BASIC20.68■□□□□ 0.9
HOXC9P31274 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC20.68■□□□□ 0.9
HOXC9P31274 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC9P31274 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC9P31274 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC20.68■□□□□ 0.9
HOXC9P31274 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC20.68■□□□□ 0.9
HOXC9P31274 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC20.68■□□□□ 0.9
HOXC9P31274 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC9P31274 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC9P31274 CD8B2-202ENST00000417670 633 ntBASIC20.68■□□□□ 0.9
HOXC9P31274 AC007969.1-201ENST00000433675 447 ntBASIC20.68■□□□□ 0.9
HOXC9P31274 AC114812.1-204ENST00000449669 728 ntBASIC20.68■□□□□ 0.9
HOXC9P31274 AL591846.1-201ENST00000451736 433 ntBASIC20.68■□□□□ 0.9
HOXC9P31274 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC20.68■□□□□ 0.9
HOXC9P31274 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC9P31274 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC20.68■□□□□ 0.9
HOXC9P31274 AC084346.2-201ENST00000607097 949 ntBASIC20.68■□□□□ 0.9
HOXC9P31274 AC005695.3-201ENST00000614522 232 ntBASIC20.68■□□□□ 0.9
HOXC9P31274 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC20.68■□□□□ 0.9
HOXC9P31274 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC20.68■□□□□ 0.9
HOXC9P31274 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC9P31274 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC9P31274 AC026471.1-201ENST00000564629 3026 ntBASIC20.68■□□□□ 0.9
HOXC9P31274 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC20.68■□□□□ 0.9
HOXC9P31274 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC20.68■□□□□ 0.9
HOXC9P31274 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC9P31274 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC9P31274 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC9P31274 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC9P31274 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC20.68■□□□□ 0.9
HOXC9P31274 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC9P31274 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC20.67■□□□□ 0.9
HOXC9P31274 HCG11-201ENST00000411553 5696 ntBASIC20.67■□□□□ 0.9
HOXC9P31274 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC20.67■□□□□ 0.9
HOXC9P31274 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
HOXC9P31274 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC9P31274 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC20.67■□□□□ 0.9
HOXC9P31274 AC112504.1-201ENST00000623415 1841 ntBASIC20.67■□□□□ 0.9
HOXC9P31274 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
HOXC9P31274 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC9P31274 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC9P31274 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC9P31274 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC9P31274 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC9P31274 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC20.67■□□□□ 0.9
HOXC9P31274 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC9P31274 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC9P31274 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC20.67■□□□□ 0.9
HOXC9P31274 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC20.67■□□□□ 0.9
HOXC9P31274 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
HOXC9P31274 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC9P31274 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC20.67■□□□□ 0.9
HOXC9P31274 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC9P31274 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC20.67■□□□□ 0.9
HOXC9P31274 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC9P31274 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms