Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC3P19447 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC3P19447 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC3P19447 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC18.34■□□□□ 0.53
ERCC3P19447 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC3P19447 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
ERCC3P19447 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC3P19447 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
ERCC3P19447 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC18.34■□□□□ 0.53
ERCC3P19447 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC18.34■□□□□ 0.53
ERCC3P19447 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC3P19447 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC18.34■□□□□ 0.53
ERCC3P19447 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC18.34■□□□□ 0.53
ERCC3P19447 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC18.34■□□□□ 0.53
ERCC3P19447 CROCCP4-201ENST00000457096 498 ntBASIC18.34■□□□□ 0.53
ERCC3P19447 POU5F1P6-201ENST00000466990 990 ntBASIC18.34■□□□□ 0.53
ERCC3P19447 SNX29P1-201ENST00000548357 1007 ntBASIC18.34■□□□□ 0.53
ERCC3P19447 AC015936.2-201ENST00000593177 259 ntBASIC18.34■□□□□ 0.53
ERCC3P19447 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
ERCC3P19447 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
ERCC3P19447 MIR6775-201ENST00000617557 69 ntBASIC18.34■□□□□ 0.53
ERCC3P19447 RPSAP52-203ENST00000622976 1023 ntBASIC18.34■□□□□ 0.53
ERCC3P19447 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
ERCC3P19447 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC3P19447 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC3P19447 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC18.34■□□□□ 0.53
ERCC3P19447 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
ERCC3P19447 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC3P19447 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC3P19447 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC3P19447 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC3P19447 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC18.34■□□□□ 0.53
ERCC3P19447 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC3P19447 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
ERCC3P19447 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC18.34■□□□□ 0.53
ERCC3P19447 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC3P19447 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
ERCC3P19447 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
ERCC3P19447 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC18.33■□□□□ 0.53
ERCC3P19447 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
ERCC3P19447 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC18.33■□□□□ 0.53
ERCC3P19447 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
ERCC3P19447 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
ERCC3P19447 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ERCC3P19447 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC18.33■□□□□ 0.52
ERCC3P19447 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC18.33■□□□□ 0.52
ERCC3P19447 EEF1DP4-201ENST00000446006 880 ntBASIC18.33■□□□□ 0.52
ERCC3P19447 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
ERCC3P19447 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC18.33■□□□□ 0.52
ERCC3P19447 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC18.33■□□□□ 0.52
ERCC3P19447 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
ERCC3P19447 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC18.33■□□□□ 0.52
ERCC3P19447 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
ERCC3P19447 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.52
ERCC3P19447 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC18.33■□□□□ 0.52
ERCC3P19447 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
ERCC3P19447 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC18.33■□□□□ 0.52
ERCC3P19447 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC18.33■□□□□ 0.52
ERCC3P19447 AL158212.4-201ENST00000624062 1286 ntBASIC18.33■□□□□ 0.52
ERCC3P19447 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC18.33■□□□□ 0.52
ERCC3P19447 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ERCC3P19447 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC18.33■□□□□ 0.52
ERCC3P19447 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
ERCC3P19447 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ERCC3P19447 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ERCC3P19447 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ERCC3P19447 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
ERCC3P19447 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
ERCC3P19447 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
ERCC3P19447 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
ERCC3P19447 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
ERCC3P19447 AL592424.1-201ENST00000563624 1536 ntBASIC18.33■□□□□ 0.52
ERCC3P19447 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
ERCC3P19447 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ERCC3P19447 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
ERCC3P19447 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ERCC3P19447 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
ERCC3P19447 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
ERCC3P19447 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
ERCC3P19447 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC3P19447 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC18.32■□□□□ 0.52
ERCC3P19447 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC3P19447 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC3P19447 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC18.32■□□□□ 0.52
ERCC3P19447 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC3P19447 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC3P19447 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC18.32■□□□□ 0.52
ERCC3P19447 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC18.32■□□□□ 0.52
ERCC3P19447 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC3P19447 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC3P19447 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC3P19447 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC3P19447 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC3P19447 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC18.32■□□□□ 0.52
ERCC3P19447 RPL13P2-201ENST00000440687 659 ntBASIC18.32■□□□□ 0.52
ERCC3P19447 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC18.32■□□□□ 0.52
ERCC3P19447 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC18.32■□□□□ 0.52
ERCC3P19447 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC18.32■□□□□ 0.52
ERCC3P19447 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC18.32■□□□□ 0.52
ERCC3P19447 COX11-210ENST00000639671 696 ntBASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms