Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.26■□□□□ 0.19
HMGA1P17096 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGA1P17096 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.26■□□□□ 0.19
HMGA1P17096 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGA1P17096 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
HMGA1P17096 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
HMGA1P17096 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
HMGA1P17096 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.26■□□□□ 0.19
HMGA1P17096 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HMGA1P17096 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGA1P17096 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGA1P17096 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.26■□□□□ 0.19
HMGA1P17096 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HMGA1P17096 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.26■□□□□ 0.19
HMGA1P17096 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGA1P17096 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGA1P17096 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC16.26■□□□□ 0.19
HMGA1P17096 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGA1P17096 STX1A-203ENST00000395155 783 ntTSL 2 BASIC16.26■□□□□ 0.19
HMGA1P17096 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGA1P17096 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
HMGA1P17096 KSR1-207ENST00000578981 748 ntTSL 4 BASIC16.26■□□□□ 0.19
HMGA1P17096 AC025181.2-201ENST00000606994 802 ntBASIC16.26■□□□□ 0.19
HMGA1P17096 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HMGA1P17096 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGA1P17096 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGA1P17096 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGA1P17096 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
HMGA1P17096 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
HMGA1P17096 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGA1P17096 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
HMGA1P17096 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGA1P17096 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGA1P17096 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
HMGA1P17096 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGA1P17096 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGA1P17096 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.25■□□□□ 0.19
HMGA1P17096 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGA1P17096 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
HMGA1P17096 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGA1P17096 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.25■□□□□ 0.19
HMGA1P17096 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGA1P17096 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGA1P17096 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGA1P17096 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGA1P17096 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
HMGA1P17096 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.25■□□□□ 0.19
HMGA1P17096 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGA1P17096 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGA1P17096 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.25■□□□□ 0.19
HMGA1P17096 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HMGA1P17096 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGA1P17096 GZMB-202ENST00000382540 816 ntTSL 5 BASIC16.25■□□□□ 0.19
HMGA1P17096 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
HMGA1P17096 AC099336.1-201ENST00000417053 1171 ntBASIC16.25■□□□□ 0.19
HMGA1P17096 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC16.25■□□□□ 0.19
HMGA1P17096 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC16.25■□□□□ 0.19
HMGA1P17096 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC16.25■□□□□ 0.19
HMGA1P17096 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC16.25■□□□□ 0.19
HMGA1P17096 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC16.25■□□□□ 0.19
HMGA1P17096 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC16.25■□□□□ 0.19
HMGA1P17096 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC16.25■□□□□ 0.19
HMGA1P17096 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC16.25■□□□□ 0.19
HMGA1P17096 AC244669.2-201ENST00000612320 853 ntBASIC16.25■□□□□ 0.19
HMGA1P17096 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HMGA1P17096 SERF2-217ENST00000630046 862 ntTSL 5 BASIC16.25■□□□□ 0.19
HMGA1P17096 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
HMGA1P17096 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.25■□□□□ 0.19
HMGA1P17096 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.25■□□□□ 0.19
HMGA1P17096 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.25■□□□□ 0.19
HMGA1P17096 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGA1P17096 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGA1P17096 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HMGA1P17096 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HMGA1P17096 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HMGA1P17096 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC16.25■□□□□ 0.19
HMGA1P17096 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC16.25■□□□□ 0.19
HMGA1P17096 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.25■□□□□ 0.19
HMGA1P17096 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGA1P17096 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.25■□□□□ 0.19
HMGA1P17096 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC16.25■□□□□ 0.19
HMGA1P17096 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.24■□□□□ 0.19
HMGA1P17096 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGA1P17096 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGA1P17096 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
HMGA1P17096 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HMGA1P17096 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
HMGA1P17096 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
HMGA1P17096 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HMGA1P17096 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HMGA1P17096 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.24■□□□□ 0.19
HMGA1P17096 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.24■□□□□ 0.19
HMGA1P17096 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGA1P17096 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HMGA1P17096 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGA1P17096 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGA1P17096 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGA1P17096 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HMGA1P17096 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGA1P17096 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms