Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
TPM1P09493 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC17.53■□□□□ 0.4
TPM1P09493 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.53■□□□□ 0.4
TPM1P09493 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.53■□□□□ 0.4
TPM1P09493 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC17.53■□□□□ 0.4
TPM1P09493 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
TPM1P09493 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC17.53■□□□□ 0.4
TPM1P09493 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
TPM1P09493 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.53■□□□□ 0.4
TPM1P09493 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC17.53■□□□□ 0.4
TPM1P09493 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC17.53■□□□□ 0.4
TPM1P09493 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
TPM1P09493 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TPM1P09493 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
TPM1P09493 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
TPM1P09493 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
TPM1P09493 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TPM1P09493 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TPM1P09493 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TPM1P09493 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TPM1P09493 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TPM1P09493 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TPM1P09493 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC17.52■□□□□ 0.4
TPM1P09493 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TPM1P09493 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TPM1P09493 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TPM1P09493 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
TPM1P09493 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TPM1P09493 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TPM1P09493 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC17.52■□□□□ 0.4
TPM1P09493 AL359258.3-201ENST00000622910 2331 ntBASIC17.52■□□□□ 0.4
TPM1P09493 AC134407.2-201ENST00000625089 1978 ntBASIC17.52■□□□□ 0.4
TPM1P09493 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TPM1P09493 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.52■□□□□ 0.4
TPM1P09493 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TPM1P09493 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.52■□□□□ 0.4
TPM1P09493 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.52■□□□□ 0.4
TPM1P09493 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TPM1P09493 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.52■□□□□ 0.4
TPM1P09493 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
TPM1P09493 AL009183.1-201ENST00000603760 355 ntBASIC17.52■□□□□ 0.4
TPM1P09493 AL445228.2-201ENST00000605589 952 ntBASIC17.52■□□□□ 0.4
TPM1P09493 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TPM1P09493 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TPM1P09493 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.52■□□□□ 0.4
TPM1P09493 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
TPM1P09493 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC17.52■□□□□ 0.4
TPM1P09493 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC17.52■□□□□ 0.4
TPM1P09493 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TPM1P09493 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TPM1P09493 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TPM1P09493 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC17.52■□□□□ 0.39
TPM1P09493 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.39
TPM1P09493 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
TPM1P09493 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC17.52■□□□□ 0.39
TPM1P09493 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TPM1P09493 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TPM1P09493 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
TPM1P09493 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TPM1P09493 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TPM1P09493 MECR-202ENST00000373791 2416 ntTSL 2 BASIC17.51■□□□□ 0.39
TPM1P09493 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TPM1P09493 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
TPM1P09493 AC073439.1-201ENST00000624121 1774 ntBASIC17.51■□□□□ 0.39
TPM1P09493 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TPM1P09493 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TPM1P09493 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TPM1P09493 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TPM1P09493 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
TPM1P09493 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
TPM1P09493 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TPM1P09493 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
TPM1P09493 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC17.51■□□□□ 0.39
TPM1P09493 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.51■□□□□ 0.39
TPM1P09493 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
TPM1P09493 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TPM1P09493 AC108751.1-201ENST00000490852 363 ntBASIC17.51■□□□□ 0.39
TPM1P09493 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TPM1P09493 TOLLIP-AS1-201ENST00000530897 939 ntBASIC17.51■□□□□ 0.39
TPM1P09493 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.51■□□□□ 0.39
TPM1P09493 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.51■□□□□ 0.39
TPM1P09493 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.51■□□□□ 0.39
TPM1P09493 TBCB-205ENST00000585746 875 ntTSL 3 BASIC17.51■□□□□ 0.39
TPM1P09493 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC17.51■□□□□ 0.39
TPM1P09493 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
TPM1P09493 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TPM1P09493 IFNL4P1-201ENST00000607083 540 ntBASIC17.51■□□□□ 0.39
TPM1P09493 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC17.51■□□□□ 0.39
TPM1P09493 AC106881.1-201ENST00000605849 3329 ntBASIC17.51■□□□□ 0.39
TPM1P09493 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC17.51■□□□□ 0.39
TPM1P09493 ILF3-AS1-201ENST00000591501 1983 ntBASIC17.51■□□□□ 0.39
TPM1P09493 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TPM1P09493 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
TPM1P09493 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.51■□□□□ 0.39
TPM1P09493 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TPM1P09493 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TPM1P09493 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC17.5■□□□□ 0.39
TPM1P09493 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC17.5■□□□□ 0.39
TPM1P09493 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
TPM1P09493 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms