Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.04■□□□□ 0.16
HLA-DQB2P05538 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DQB2P05538 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DQB2P05538 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC16.04■□□□□ 0.16
HLA-DQB2P05538 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DQB2P05538 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DQB2P05538 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DQB2P05538 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DQB2P05538 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.04■□□□□ 0.16
HLA-DQB2P05538 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DQB2P05538 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.04■□□□□ 0.16
HLA-DQB2P05538 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DQB2P05538 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DQB2P05538 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
HLA-DQB2P05538 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 AC009477.1-201ENST00000452936 217 ntBASIC16.03■□□□□ 0.16
HLA-DQB2P05538 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 AC074044.1-201ENST00000609673 707 ntBASIC16.03■□□□□ 0.16
HLA-DQB2P05538 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 AC087481.3-201ENST00000602886 1894 ntBASIC16.03■□□□□ 0.16
HLA-DQB2P05538 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
HLA-DQB2P05538 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DQB2P05538 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.02■□□□□ 0.16
HLA-DQB2P05538 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DQB2P05538 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.02■□□□□ 0.16
HLA-DQB2P05538 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DQB2P05538 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DQB2P05538 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.16
HLA-DQB2P05538 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.02■□□□□ 0.16
HLA-DQB2P05538 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
HLA-DQB2P05538 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.02■□□□□ 0.16
HLA-DQB2P05538 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DQB2P05538 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
HLA-DQB2P05538 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DQB2P05538 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DQB2P05538 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DQB2P05538 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.02■□□□□ 0.16
HLA-DQB2P05538 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.02■□□□□ 0.16
HLA-DQB2P05538 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC16.02■□□□□ 0.16
HLA-DQB2P05538 AC004890.2-204ENST00000481968 304 ntBASIC16.02■□□□□ 0.16
HLA-DQB2P05538 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC16.02■□□□□ 0.16
HLA-DQB2P05538 SLED1-202ENST00000512051 380 ntBASIC16.02■□□□□ 0.16
HLA-DQB2P05538 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.02■□□□□ 0.16
HLA-DQB2P05538 ZNF890P-202ENST00000530367 1156 ntBASIC16.02■□□□□ 0.16
HLA-DQB2P05538 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC16.02■□□□□ 0.16
HLA-DQB2P05538 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.02■□□□□ 0.16
HLA-DQB2P05538 SSH2-210ENST00000582084 560 ntTSL 3 BASIC16.02■□□□□ 0.16
HLA-DQB2P05538 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
HLA-DQB2P05538 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.02■□□□□ 0.16
HLA-DQB2P05538 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
HLA-DQB2P05538 AF228730.6-201ENST00000641497 218 ntBASIC16.02■□□□□ 0.16
HLA-DQB2P05538 AC084121.3-201ENST00000641716 218 ntBASIC16.02■□□□□ 0.16
HLA-DQB2P05538 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
HLA-DQB2P05538 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HLA-DQB2P05538 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
HLA-DQB2P05538 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC16.02■□□□□ 0.15
HLA-DQB2P05538 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.02■□□□□ 0.15
HLA-DQB2P05538 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.02■□□□□ 0.15
HLA-DQB2P05538 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HLA-DQB2P05538 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms