Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC13.33□□□□□ -0.28
ABCA1O95477 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC13.33□□□□□ -0.28
ABCA1O95477 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA1O95477 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA1O95477 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC13.33□□□□□ -0.28
ABCA1O95477 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA1O95477 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA1O95477 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA1O95477 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
ABCA1O95477 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA1O95477 NSL1-201ENST00000366976 722 ntTSL 2 BASIC13.33□□□□□ -0.28
ABCA1O95477 VMO1-203ENST00000416307 712 ntTSL 2 BASIC13.33□□□□□ -0.28
ABCA1O95477 RAD18-204ENST00000418463 563 ntTSL 4 BASIC13.33□□□□□ -0.28
ABCA1O95477 RAD18-205ENST00000421052 582 ntTSL 3 BASIC13.33□□□□□ -0.28
ABCA1O95477 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC13.33□□□□□ -0.28
ABCA1O95477 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA1O95477 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC13.33□□□□□ -0.28
ABCA1O95477 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC13.33□□□□□ -0.28
ABCA1O95477 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC13.33□□□□□ -0.28
ABCA1O95477 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA1O95477 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA1O95477 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA1O95477 AMT-232ENST00000636199 1546 ntTSL 5 BASIC13.33□□□□□ -0.28
ABCA1O95477 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC13.33□□□□□ -0.28
ABCA1O95477 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
ABCA1O95477 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
ABCA1O95477 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA1O95477 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA1O95477 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA1O95477 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA1O95477 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA1O95477 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA1O95477 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA1O95477 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
ABCA1O95477 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC13.32□□□□□ -0.28
ABCA1O95477 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA1O95477 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA1O95477 GZMB-202ENST00000382540 816 ntTSL 5 BASIC13.32□□□□□ -0.28
ABCA1O95477 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC13.32□□□□□ -0.28
ABCA1O95477 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA1O95477 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC13.32□□□□□ -0.28
ABCA1O95477 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC13.32□□□□□ -0.28
ABCA1O95477 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA1O95477 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA1O95477 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA1O95477 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC13.32□□□□□ -0.28
ABCA1O95477 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA1O95477 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA1O95477 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
ABCA1O95477 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC13.32□□□□□ -0.28
ABCA1O95477 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA1O95477 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA1O95477 AC078925.2-201ENST00000624013 1973 ntBASIC13.32□□□□□ -0.28
ABCA1O95477 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC13.32□□□□□ -0.28
ABCA1O95477 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC13.32□□□□□ -0.28
ABCA1O95477 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA1O95477 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA1O95477 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA1O95477 BOLA2P3-201ENST00000404566 256 ntBASIC13.32□□□□□ -0.28
ABCA1O95477 MIR1908-201ENST00000410394 80 ntBASIC13.32□□□□□ -0.28
ABCA1O95477 NME6-203ENST00000415644 849 ntTSL 2 BASIC13.32□□□□□ -0.28
ABCA1O95477 CSF2RBP1-201ENST00000447905 391 ntBASIC13.32□□□□□ -0.28
ABCA1O95477 CTBP2P5-201ENST00000454986 1264 ntBASIC13.32□□□□□ -0.28
ABCA1O95477 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
ABCA1O95477 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC13.32□□□□□ -0.28
ABCA1O95477 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC13.32□□□□□ -0.28
ABCA1O95477 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC13.32□□□□□ -0.28
ABCA1O95477 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC13.32□□□□□ -0.28
ABCA1O95477 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC13.32□□□□□ -0.28
ABCA1O95477 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA1O95477 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
ABCA1O95477 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
ABCA1O95477 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA1O95477 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
ABCA1O95477 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
ABCA1O95477 WTIP-202ENST00000590071 13665 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA1O95477 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA1O95477 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC13.31□□□□□ -0.28
ABCA1O95477 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC13.31□□□□□ -0.28
ABCA1O95477 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC13.31□□□□□ -0.28
ABCA1O95477 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA1O95477 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC13.31□□□□□ -0.28
ABCA1O95477 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
ABCA1O95477 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA1O95477 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
ABCA1O95477 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA1O95477 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA1O95477 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC13.31□□□□□ -0.28
ABCA1O95477 AL583810.1-201ENST00000553344 1045 ntBASIC13.31□□□□□ -0.28
ABCA1O95477 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC13.31□□□□□ -0.28
ABCA1O95477 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA1O95477 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA1O95477 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
ABCA1O95477 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
ABCA1O95477 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC13.31□□□□□ -0.28
ABCA1O95477 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA1O95477 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
ABCA1O95477 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA1O95477 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
ABCA1O95477 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms