Protein–RNA interactions for Protein: Q9HCM3

KIAA1549, UPF0606 protein KIAA1549, humanhuman

Predictions only

Length 1,950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KIAA1549Q9HCM3 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 MIR5189-201ENST00000577370 114 ntBASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 MIR6752-201ENST00000618442 71 ntBASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 MSTO2P-201ENST00000314835 1709 ntBASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 HNRNPA1P48-201ENST00000562726 1377 ntBASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 AC093525.8-201ENST00000624099 1342 ntBASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 HIST1H2BPS3-201ENST00000419683 341 ntBASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 CROCCP4-201ENST00000457096 498 ntBASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 RAB43P1-201ENST00000561790 589 ntBASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 AC120045.2-201ENST00000567334 178 ntBASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 AC000095.1-201ENST00000603208 874 ntBASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 TK1-203ENST00000588734 1681 ntTSL 2 BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC13.98□□□□□ -0.17
KIAA1549Q9HCM3 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 AC084364.1-201ENST00000551967 1556 ntBASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 HLA-V-201ENST00000429037 534 ntBASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 AC104596.2-201ENST00000512793 793 ntBASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 AL359711.2-201ENST00000563105 872 ntBASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 CU634019.7-201ENST00000624153 1185 ntBASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 FP236241.2-201ENST00000624906 1185 ntBASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC13.97□□□□□ -0.17
KIAA1549Q9HCM3 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
KIAA1549Q9HCM3 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC13.96□□□□□ -0.17
KIAA1549Q9HCM3 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
KIAA1549Q9HCM3 NME2-201ENST00000393183 568 ntTSL 2 BASIC13.96□□□□□ -0.17
KIAA1549Q9HCM3 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
KIAA1549Q9HCM3 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC13.96□□□□□ -0.17
KIAA1549Q9HCM3 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC13.96□□□□□ -0.17
KIAA1549Q9HCM3 VDAC1P7-201ENST00000462417 847 ntBASIC13.96□□□□□ -0.17
KIAA1549Q9HCM3 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC13.96□□□□□ -0.17
KIAA1549Q9HCM3 FTH1P14-201ENST00000482930 551 ntBASIC13.96□□□□□ -0.17
KIAA1549Q9HCM3 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
KIAA1549Q9HCM3 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC13.96□□□□□ -0.17
KIAA1549Q9HCM3 AL359881.2-201ENST00000602973 570 ntBASIC13.96□□□□□ -0.17
KIAA1549Q9HCM3 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.17
KIAA1549Q9HCM3 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
KIAA1549Q9HCM3 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
KIAA1549Q9HCM3 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
KIAA1549Q9HCM3 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
KIAA1549Q9HCM3 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
KIAA1549Q9HCM3 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
KIAA1549Q9HCM3 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
KIAA1549Q9HCM3 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
KIAA1549Q9HCM3 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms