Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 TPO-203ENST00000346956 2923 ntTSL 5 BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 AC011477.6-201ENST00000604980 1927 ntBASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 MIR1233-2-201ENST00000408138 82 ntBASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 MIR1233-1-201ENST00000408722 82 ntBASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 ADH5P3-201ENST00000433842 1137 ntBASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 FAM58CP-201ENST00000435741 640 ntBASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 AC245100.5-201ENST00000452108 331 ntBASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 AC092865.5-201ENST00000545435 363 ntBASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 AC073389.1-201ENST00000595595 795 ntBASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 LINC02228-204ENST00000642115 2962 ntBASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 AL161772.1-201ENST00000610494 4412 ntBASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 AL591424.1-201ENST00000442569 1213 ntBASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 NMU-202ENST00000505262 693 ntTSL 3 BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 AC061975.2-201ENST00000581722 295 ntBASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM56Q9BRZ2 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM56Q9BRZ2 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms