Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 NOC2LP2-201ENST00000407594 1944 ntBASIC25.49■■□□□ 1.67
IFT140Q96RY7 AC020916.1-201ENST00000587762 1774 ntBASIC25.49■■□□□ 1.67
IFT140Q96RY7 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
IFT140Q96RY7 RNF216P1-203ENST00000404404 2427 ntBASIC25.49■■□□□ 1.67
IFT140Q96RY7 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
IFT140Q96RY7 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
IFT140Q96RY7 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC25.49■■□□□ 1.67
IFT140Q96RY7 AC079112.1-201ENST00000454972 939 ntBASIC25.49■■□□□ 1.67
IFT140Q96RY7 NDUFS6P1-201ENST00000485187 316 ntBASIC25.49■■□□□ 1.67
IFT140Q96RY7 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
IFT140Q96RY7 TPM1-223ENST00000560445 485 ntTSL 3 BASIC25.49■■□□□ 1.67
IFT140Q96RY7 DUX4L47-201ENST00000566374 394 ntBASIC25.49■■□□□ 1.67
IFT140Q96RY7 AC005632.3-201ENST00000605544 308 ntBASIC25.49■■□□□ 1.67
IFT140Q96RY7 RPL35-206ENST00000629845 340 ntTSL 5 BASIC25.49■■□□□ 1.67
IFT140Q96RY7 AL645728.2-202ENST00000641679 227 ntBASIC25.49■■□□□ 1.67
IFT140Q96RY7 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
IFT140Q96RY7 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
IFT140Q96RY7 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
IFT140Q96RY7 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
IFT140Q96RY7 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC25.49■■□□□ 1.67
IFT140Q96RY7 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
IFT140Q96RY7 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC25.49■■□□□ 1.67
IFT140Q96RY7 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
IFT140Q96RY7 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC25.49■■□□□ 1.67
IFT140Q96RY7 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
IFT140Q96RY7 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC25.48■■□□□ 1.67
IFT140Q96RY7 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
IFT140Q96RY7 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
IFT140Q96RY7 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC25.48■■□□□ 1.67
IFT140Q96RY7 RPL18AP3-201ENST00000462885 528 ntBASIC25.48■■□□□ 1.67
IFT140Q96RY7 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC25.48■■□□□ 1.67
IFT140Q96RY7 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC25.48■■□□□ 1.67
IFT140Q96RY7 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC25.48■■□□□ 1.67
IFT140Q96RY7 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC25.48■■□□□ 1.67
IFT140Q96RY7 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC25.48■■□□□ 1.67
IFT140Q96RY7 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC25.48■■□□□ 1.67
IFT140Q96RY7 MIR6858-201ENST00000620733 67 ntBASIC25.48■■□□□ 1.67
IFT140Q96RY7 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC25.48■■□□□ 1.67
IFT140Q96RY7 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC25.48■■□□□ 1.67
IFT140Q96RY7 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC25.48■■□□□ 1.67
IFT140Q96RY7 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
IFT140Q96RY7 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
IFT140Q96RY7 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
IFT140Q96RY7 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC25.48■■□□□ 1.67
IFT140Q96RY7 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
IFT140Q96RY7 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
IFT140Q96RY7 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC25.48■■□□□ 1.67
IFT140Q96RY7 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
IFT140Q96RY7 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
IFT140Q96RY7 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC25.48■■□□□ 1.67
IFT140Q96RY7 AC055811.4-201ENST00000624039 1754 ntBASIC25.48■■□□□ 1.67
IFT140Q96RY7 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
IFT140Q96RY7 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
IFT140Q96RY7 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
IFT140Q96RY7 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC25.47■■□□□ 1.67
IFT140Q96RY7 HPGD-203ENST00000422112 805 ntTSL 2 BASIC25.47■■□□□ 1.67
IFT140Q96RY7 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC25.47■■□□□ 1.67
IFT140Q96RY7 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC25.47■■□□□ 1.67
IFT140Q96RY7 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
IFT140Q96RY7 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC25.47■■□□□ 1.67
IFT140Q96RY7 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC25.47■■□□□ 1.67
IFT140Q96RY7 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
IFT140Q96RY7 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC25.47■■□□□ 1.67
IFT140Q96RY7 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC25.47■■□□□ 1.67
IFT140Q96RY7 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC25.47■■□□□ 1.67
IFT140Q96RY7 SHC1P1-201ENST00000425230 1745 ntBASIC25.47■■□□□ 1.67
IFT140Q96RY7 FAM90A7P-201ENST00000382628 1395 ntBASIC25.47■■□□□ 1.67
IFT140Q96RY7 FAM90A23P-201ENST00000400136 1395 ntBASIC25.47■■□□□ 1.67
IFT140Q96RY7 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC25.47■■□□□ 1.67
IFT140Q96RY7 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
IFT140Q96RY7 UBALD1-205ENST00000590891 2641 ntBASIC25.47■■□□□ 1.67
IFT140Q96RY7 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC25.47■■□□□ 1.67
IFT140Q96RY7 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
IFT140Q96RY7 MIR648-201ENST00000385046 94 ntBASIC25.47■■□□□ 1.67
IFT140Q96RY7 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC25.47■■□□□ 1.67
IFT140Q96RY7 FAM58BP-201ENST00000439056 645 ntBASIC25.47■■□□□ 1.67
IFT140Q96RY7 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC25.47■■□□□ 1.67
IFT140Q96RY7 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC25.47■■□□□ 1.67
IFT140Q96RY7 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
IFT140Q96RY7 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC25.47■■□□□ 1.67
IFT140Q96RY7 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
IFT140Q96RY7 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
IFT140Q96RY7 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
IFT140Q96RY7 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC25.46■■□□□ 1.67
IFT140Q96RY7 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
IFT140Q96RY7 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC25.46■■□□□ 1.67
IFT140Q96RY7 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
IFT140Q96RY7 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC25.46■■□□□ 1.67
IFT140Q96RY7 AMT-204ENST00000427987 1646 ntTSL 5 BASIC25.46■■□□□ 1.67
IFT140Q96RY7 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
IFT140Q96RY7 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC25.46■■□□□ 1.67
IFT140Q96RY7 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
IFT140Q96RY7 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
IFT140Q96RY7 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
IFT140Q96RY7 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC25.46■■□□□ 1.67
IFT140Q96RY7 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC25.46■■□□□ 1.67
IFT140Q96RY7 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC25.46■■□□□ 1.67
IFT140Q96RY7 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC25.46■■□□□ 1.67
IFT140Q96RY7 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
IFT140Q96RY7 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC25.46■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms