Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 LRRFIP1P1-201ENST00000498774 2246 ntBASIC11.93□□□□□ -0.5
LINC00477Q96M19 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 NME2-201ENST00000393183 568 ntTSL 2 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 AL591424.1-201ENST00000442569 1213 ntBASIC11.93□□□□□ -0.5
LINC00477Q96M19 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 KRT18P2-201ENST00000447938 1258 ntBASIC11.93□□□□□ -0.5
LINC00477Q96M19 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 FLII-221ENST00000578558 2377 ntTSL 5 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 API5-202ENST00000420461 2009 ntTSL 2 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 RAC2-202ENST00000401529 569 ntTSL 4 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 LBH-204ENST00000406087 559 ntTSL 4 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 AL671277.1-201ENST00000429656 993 ntBASIC11.92□□□□□ -0.5
LINC00477Q96M19 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 AC007967.2-201ENST00000432613 625 ntBASIC11.92□□□□□ -0.5
LINC00477Q96M19 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 AL138918.1-201ENST00000568306 659 ntBASIC11.92□□□□□ -0.5
LINC00477Q96M19 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 AC027307.2-201ENST00000591252 911 ntBASIC11.92□□□□□ -0.5
LINC00477Q96M19 NKG7-205ENST00000600427 520 ntTSL 3 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC11.92□□□□□ -0.5
LINC00477Q96M19 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms