Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
BRF1Q92994 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
BRF1Q92994 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRF1Q92994 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
BRF1Q92994 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRF1Q92994 CETN4P-206ENST00000642099 2168 ntBASIC18.65■□□□□ 0.58
BRF1Q92994 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
BRF1Q92994 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC18.65■□□□□ 0.58
BRF1Q92994 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
BRF1Q92994 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC18.65■□□□□ 0.58
BRF1Q92994 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC18.65■□□□□ 0.58
BRF1Q92994 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
BRF1Q92994 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRF1Q92994 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
BRF1Q92994 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRF1Q92994 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
BRF1Q92994 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRF1Q92994 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
BRF1Q92994 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRF1Q92994 FO393414.2-201ENST00000405153 598 ntBASIC18.65■□□□□ 0.58
BRF1Q92994 RPL37AP1-201ENST00000412502 279 ntBASIC18.65■□□□□ 0.58
BRF1Q92994 AC136604.1-201ENST00000418535 575 ntBASIC18.65■□□□□ 0.58
BRF1Q92994 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC18.65■□□□□ 0.58
BRF1Q92994 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRF1Q92994 URGCP-206ENST00000446958 365 ntTSL 2 BASIC18.65■□□□□ 0.58
BRF1Q92994 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC18.65■□□□□ 0.58
BRF1Q92994 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC18.65■□□□□ 0.58
BRF1Q92994 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
BRF1Q92994 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC18.65■□□□□ 0.58
BRF1Q92994 TUBB3P1-201ENST00000405796 1332 ntBASIC18.65■□□□□ 0.58
BRF1Q92994 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
BRF1Q92994 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
BRF1Q92994 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRF1Q92994 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
BRF1Q92994 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
BRF1Q92994 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
BRF1Q92994 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
BRF1Q92994 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRF1Q92994 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
BRF1Q92994 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRF1Q92994 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC18.65■□□□□ 0.58
BRF1Q92994 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRF1Q92994 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRF1Q92994 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC18.65■□□□□ 0.58
BRF1Q92994 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
BRF1Q92994 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
BRF1Q92994 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
BRF1Q92994 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
BRF1Q92994 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
BRF1Q92994 GRN-214ENST00000589265 1632 ntTSL 5 BASIC18.64■□□□□ 0.57
BRF1Q92994 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
BRF1Q92994 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
BRF1Q92994 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
BRF1Q92994 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
BRF1Q92994 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
BRF1Q92994 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
BRF1Q92994 CNN2P2-201ENST00000443536 909 ntBASIC18.64■□□□□ 0.57
BRF1Q92994 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
BRF1Q92994 CNN2P3-201ENST00000450201 906 ntBASIC18.64■□□□□ 0.57
BRF1Q92994 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.64■□□□□ 0.57
BRF1Q92994 PTK7-212ENST00000476760 902 ntTSL 2 BASIC18.64■□□□□ 0.57
BRF1Q92994 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
BRF1Q92994 AC025678.2-201ENST00000562061 970 ntBASIC18.64■□□□□ 0.57
BRF1Q92994 PRR29-209ENST00000582540 967 ntTSL 2 BASIC18.64■□□□□ 0.57
BRF1Q92994 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
BRF1Q92994 SPDYE12P-201ENST00000618416 771 ntBASIC18.64■□□□□ 0.57
BRF1Q92994 AL136317.3-201ENST00000618497 906 ntBASIC18.64■□□□□ 0.57
BRF1Q92994 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC18.64■□□□□ 0.57
BRF1Q92994 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
BRF1Q92994 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
BRF1Q92994 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
BRF1Q92994 AC011270.2-201ENST00000624293 2550 ntBASIC18.64■□□□□ 0.57
BRF1Q92994 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
BRF1Q92994 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
BRF1Q92994 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC18.64■□□□□ 0.57
BRF1Q92994 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BRF1Q92994 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC18.63■□□□□ 0.57
BRF1Q92994 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BRF1Q92994 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC18.63■□□□□ 0.57
BRF1Q92994 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
BRF1Q92994 TMBIM7P-203ENST00000641617 1718 ntBASIC18.63■□□□□ 0.57
BRF1Q92994 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.63■□□□□ 0.57
BRF1Q92994 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
BRF1Q92994 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
BRF1Q92994 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BRF1Q92994 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
BRF1Q92994 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC18.63■□□□□ 0.57
BRF1Q92994 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC18.63■□□□□ 0.57
BRF1Q92994 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC18.63■□□□□ 0.57
BRF1Q92994 GPER1-207ENST00000619052 571 ntTSL 2 BASIC18.63■□□□□ 0.57
BRF1Q92994 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
BRF1Q92994 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC18.63■□□□□ 0.57
BRF1Q92994 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BRF1Q92994 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
BRF1Q92994 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC18.63■□□□□ 0.57
BRF1Q92994 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
BRF1Q92994 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC18.63■□□□□ 0.57
BRF1Q92994 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
BRF1Q92994 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
BRF1Q92994 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms