Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
RTL3Q8N8U3 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.23■□□□□ 0.19
RTL3Q8N8U3 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RTL3Q8N8U3 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.23■□□□□ 0.19
RTL3Q8N8U3 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.23■□□□□ 0.19
RTL3Q8N8U3 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC16.23■□□□□ 0.19
RTL3Q8N8U3 SLED1-202ENST00000512051 380 ntBASIC16.23■□□□□ 0.19
RTL3Q8N8U3 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RTL3Q8N8U3 AC135586.1-201ENST00000539323 574 ntBASIC16.23■□□□□ 0.19
RTL3Q8N8U3 AJ011932.1-201ENST00000621707 465 ntBASIC16.23■□□□□ 0.19
RTL3Q8N8U3 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
RTL3Q8N8U3 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.23■□□□□ 0.19
RTL3Q8N8U3 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.23■□□□□ 0.19
RTL3Q8N8U3 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RTL3Q8N8U3 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
RTL3Q8N8U3 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
RTL3Q8N8U3 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.23■□□□□ 0.19
RTL3Q8N8U3 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RTL3Q8N8U3 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
RTL3Q8N8U3 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RTL3Q8N8U3 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
RTL3Q8N8U3 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.23■□□□□ 0.19
RTL3Q8N8U3 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RTL3Q8N8U3 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RTL3Q8N8U3 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
RTL3Q8N8U3 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 HNRNPA1P40-201ENST00000426371 1278 ntBASIC16.22■□□□□ 0.19
RTL3Q8N8U3 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 BCRP1-201ENST00000444246 691 ntBASIC16.22■□□□□ 0.19
RTL3Q8N8U3 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 UGT1A2P-201ENST00000454886 866 ntBASIC16.22■□□□□ 0.19
RTL3Q8N8U3 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 SPCS2P1-201ENST00000561636 679 ntBASIC16.22■□□□□ 0.19
RTL3Q8N8U3 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 AC011467.4-201ENST00000594891 528 ntBASIC16.22■□□□□ 0.19
RTL3Q8N8U3 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 AL096865.1-201ENST00000606796 927 ntBASIC16.22■□□□□ 0.19
RTL3Q8N8U3 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RTL3Q8N8U3 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 AC015922.1-201ENST00000421102 1152 ntBASIC16.21■□□□□ 0.19
RTL3Q8N8U3 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 AC092337.1-201ENST00000568699 1129 ntBASIC16.21■□□□□ 0.19
RTL3Q8N8U3 AF228730.6-201ENST00000641497 218 ntBASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms