Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC14.1□□□□□ -0.15
SKA3Q8IX90 ACE-203ENST00000413513 2237 ntTSL 2 BASIC14.1□□□□□ -0.15
SKA3Q8IX90 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SKA3Q8IX90 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
SKA3Q8IX90 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SKA3Q8IX90 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SKA3Q8IX90 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC14.1□□□□□ -0.15
SKA3Q8IX90 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SKA3Q8IX90 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC14.1□□□□□ -0.15
SKA3Q8IX90 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
SKA3Q8IX90 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SKA3Q8IX90 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SKA3Q8IX90 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
SKA3Q8IX90 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
SKA3Q8IX90 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SKA3Q8IX90 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
SKA3Q8IX90 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SKA3Q8IX90 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SKA3Q8IX90 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SKA3Q8IX90 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC14.09□□□□□ -0.15
SKA3Q8IX90 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SKA3Q8IX90 BNIP3P1-202ENST00000550043 1585 ntBASIC14.09□□□□□ -0.15
SKA3Q8IX90 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC14.09□□□□□ -0.15
SKA3Q8IX90 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SKA3Q8IX90 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SKA3Q8IX90 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
SKA3Q8IX90 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC14.09□□□□□ -0.15
SKA3Q8IX90 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC14.09□□□□□ -0.15
SKA3Q8IX90 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
SKA3Q8IX90 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SKA3Q8IX90 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
SKA3Q8IX90 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SKA3Q8IX90 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SKA3Q8IX90 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SKA3Q8IX90 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
SKA3Q8IX90 AC004987.2-201ENST00000395959 1148 ntBASIC14.09□□□□□ -0.15
SKA3Q8IX90 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC14.09□□□□□ -0.15
SKA3Q8IX90 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC14.09□□□□□ -0.15
SKA3Q8IX90 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC14.09□□□□□ -0.15
SKA3Q8IX90 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
SKA3Q8IX90 METTL21AP1-201ENST00000438852 635 ntBASIC14.09□□□□□ -0.15
SKA3Q8IX90 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC14.09□□□□□ -0.15
SKA3Q8IX90 SLBP-205ENST00000488267 987 ntTSL 2 BASIC14.09□□□□□ -0.15
SKA3Q8IX90 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC14.09□□□□□ -0.15
SKA3Q8IX90 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC14.09□□□□□ -0.15
SKA3Q8IX90 COQ9-214ENST00000567933 882 ntTSL 3 BASIC14.09□□□□□ -0.15
SKA3Q8IX90 LITAF-210ENST00000571976 548 ntTSL 2 BASIC14.09□□□□□ -0.15
SKA3Q8IX90 LITAF-214ENST00000574703 486 ntTSL 2 BASIC14.09□□□□□ -0.15
SKA3Q8IX90 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SKA3Q8IX90 RN7SL828P-201ENST00000607615 303 ntBASIC14.09□□□□□ -0.15
SKA3Q8IX90 AC093028.1-201ENST00000622998 982 ntBASIC14.09□□□□□ -0.15
SKA3Q8IX90 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SKA3Q8IX90 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SKA3Q8IX90 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
SKA3Q8IX90 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC14.09□□□□□ -0.15
SKA3Q8IX90 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC14.09□□□□□ -0.15
SKA3Q8IX90 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SKA3Q8IX90 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SKA3Q8IX90 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
SKA3Q8IX90 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SKA3Q8IX90 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC14.09□□□□□ -0.15
SKA3Q8IX90 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SKA3Q8IX90 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
SKA3Q8IX90 CYP4F24P-201ENST00000586049 1580 ntBASIC14.09□□□□□ -0.15
SKA3Q8IX90 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SKA3Q8IX90 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SKA3Q8IX90 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
SKA3Q8IX90 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC14.08□□□□□ -0.15
SKA3Q8IX90 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
SKA3Q8IX90 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC14.08□□□□□ -0.15
SKA3Q8IX90 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC14.08□□□□□ -0.15
SKA3Q8IX90 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
SKA3Q8IX90 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC14.08□□□□□ -0.15
SKA3Q8IX90 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC14.08□□□□□ -0.15
SKA3Q8IX90 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
SKA3Q8IX90 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.08□□□□□ -0.15
SKA3Q8IX90 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SKA3Q8IX90 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC14.08□□□□□ -0.16
SKA3Q8IX90 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SKA3Q8IX90 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
SKA3Q8IX90 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SKA3Q8IX90 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SKA3Q8IX90 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
SKA3Q8IX90 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SKA3Q8IX90 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SKA3Q8IX90 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
SKA3Q8IX90 MTND6P24-201ENST00000440466 518 ntBASIC14.08□□□□□ -0.16
SKA3Q8IX90 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SKA3Q8IX90 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC14.08□□□□□ -0.16
SKA3Q8IX90 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC14.08□□□□□ -0.16
SKA3Q8IX90 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.08□□□□□ -0.16
SKA3Q8IX90 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SKA3Q8IX90 AP003680.1-201ENST00000598970 3660 ntBASIC14.08□□□□□ -0.16
SKA3Q8IX90 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SKA3Q8IX90 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SKA3Q8IX90 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
SKA3Q8IX90 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SKA3Q8IX90 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SKA3Q8IX90 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SKA3Q8IX90 AL035456.1-201ENST00000456064 1369 ntBASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms