Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC60Q8IWA6 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CCDC60Q8IWA6 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC60Q8IWA6 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC60Q8IWA6 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC60Q8IWA6 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
CCDC60Q8IWA6 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
CCDC60Q8IWA6 OR8S1-201ENST00000310194 1080 ntBASIC17.52■□□□□ 0.4
CCDC60Q8IWA6 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC60Q8IWA6 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC17.52■□□□□ 0.4
CCDC60Q8IWA6 VDAC1P7-201ENST00000462417 847 ntBASIC17.52■□□□□ 0.4
CCDC60Q8IWA6 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC17.52■□□□□ 0.4
CCDC60Q8IWA6 AC124283.3-201ENST00000570869 594 ntBASIC17.52■□□□□ 0.4
CCDC60Q8IWA6 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC17.52■□□□□ 0.4
CCDC60Q8IWA6 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC17.52■□□□□ 0.4
CCDC60Q8IWA6 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC17.52■□□□□ 0.4
CCDC60Q8IWA6 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
CCDC60Q8IWA6 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.52■□□□□ 0.4
CCDC60Q8IWA6 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.52■□□□□ 0.4
CCDC60Q8IWA6 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
CCDC60Q8IWA6 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC60Q8IWA6 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC60Q8IWA6 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC60Q8IWA6 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC60Q8IWA6 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
CCDC60Q8IWA6 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
CCDC60Q8IWA6 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC60Q8IWA6 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC60Q8IWA6 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC17.52■□□□□ 0.39
CCDC60Q8IWA6 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC60Q8IWA6 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC60Q8IWA6 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.39
CCDC60Q8IWA6 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC60Q8IWA6 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.52■□□□□ 0.39
CCDC60Q8IWA6 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC17.52■□□□□ 0.39
CCDC60Q8IWA6 TK1-203ENST00000588734 1681 ntTSL 2 BASIC17.52■□□□□ 0.39
CCDC60Q8IWA6 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC60Q8IWA6 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 AL513523.2-202ENST00000427283 2040 ntBASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 AC010319.3-201ENST00000597028 470 ntBASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 HNRNPA1P48-201ENST00000562726 1377 ntBASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 TKT-202ENST00000423516 2075 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC60Q8IWA6 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 AL133267.1-201ENST00000398220 340 ntBASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 AC079776.1-201ENST00000401540 1152 ntBASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 AC007389.4-201ENST00000454674 793 ntBASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 AC015910.1-201ENST00000579400 975 ntBASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms