Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 AC009093.7-201ENST00000623853 1223 ntBASIC14.22□□□□□ -0.13
CLRN1P58418 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN1P58418 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
CLRN1P58418 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN1P58418 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN1P58418 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN1P58418 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC14.22□□□□□ -0.13
CLRN1P58418 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN1P58418 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN1P58418 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN1P58418 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN1P58418 KRT8P37-201ENST00000451609 1420 ntBASIC14.22□□□□□ -0.13
CLRN1P58418 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN1P58418 LRRFIP1P1-201ENST00000498774 2246 ntBASIC14.22□□□□□ -0.13
CLRN1P58418 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN1P58418 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC14.22□□□□□ -0.13
CLRN1P58418 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.22□□□□□ -0.13
CLRN1P58418 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.22□□□□□ -0.13
CLRN1P58418 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN1P58418 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
CLRN1P58418 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN1P58418 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14.21□□□□□ -0.13
CLRN1P58418 WARS-232ENST00000556645 2508 ntTSL 5 BASIC14.21□□□□□ -0.13
CLRN1P58418 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC14.21□□□□□ -0.13
CLRN1P58418 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
CLRN1P58418 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN1P58418 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN1P58418 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN1P58418 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN1P58418 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN1P58418 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN1P58418 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
CLRN1P58418 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN1P58418 MIR1233-2-201ENST00000408138 82 ntBASIC14.21□□□□□ -0.13
CLRN1P58418 MIR1233-1-201ENST00000408722 82 ntBASIC14.21□□□□□ -0.13
CLRN1P58418 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN1P58418 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC14.21□□□□□ -0.13
CLRN1P58418 AC004967.1-201ENST00000453589 447 ntBASIC14.21□□□□□ -0.13
CLRN1P58418 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC14.21□□□□□ -0.13
CLRN1P58418 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC14.21□□□□□ -0.13
CLRN1P58418 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN1P58418 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN1P58418 MIR6080-201ENST00000617359 66 ntBASIC14.21□□□□□ -0.13
CLRN1P58418 AC134684.3-201ENST00000641758 218 ntBASIC14.21□□□□□ -0.13
CLRN1P58418 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC14.21□□□□□ -0.13
CLRN1P58418 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN1P58418 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN1P58418 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN1P58418 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.21□□□□□ -0.14
CLRN1P58418 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CLRN1P58418 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CLRN1P58418 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
CLRN1P58418 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC14.2□□□□□ -0.14
CLRN1P58418 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN1P58418 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN1P58418 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.2□□□□□ -0.14
CLRN1P58418 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC14.2□□□□□ -0.14
CLRN1P58418 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CLRN1P58418 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN1P58418 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN1P58418 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN1P58418 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN1P58418 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
CLRN1P58418 RPL30-202ENST00000396070 440 ntTSL 2 BASIC14.2□□□□□ -0.14
CLRN1P58418 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC14.2□□□□□ -0.14
CLRN1P58418 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC14.2□□□□□ -0.14
CLRN1P58418 AP006288.1-201ENST00000446065 395 ntBASIC14.2□□□□□ -0.14
CLRN1P58418 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC14.2□□□□□ -0.14
CLRN1P58418 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC14.2□□□□□ -0.14
CLRN1P58418 AC026150.2-201ENST00000564693 1156 ntBASIC14.2□□□□□ -0.14
CLRN1P58418 AC105021.1-202ENST00000570572 669 ntBASIC14.2□□□□□ -0.14
CLRN1P58418 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN1P58418 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC14.2□□□□□ -0.14
CLRN1P58418 AL450472.2-201ENST00000603663 1156 ntBASIC14.2□□□□□ -0.14
CLRN1P58418 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC14.2□□□□□ -0.14
CLRN1P58418 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC14.2□□□□□ -0.14
CLRN1P58418 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN1P58418 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN1P58418 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN1P58418 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC14.2□□□□□ -0.14
CLRN1P58418 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN1P58418 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN1P58418 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN1P58418 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
CLRN1P58418 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN1P58418 CICP13-201ENST00000422015 2789 ntBASIC14.2□□□□□ -0.14
CLRN1P58418 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN1P58418 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC14.2□□□□□ -0.14
CLRN1P58418 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
CLRN1P58418 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN1P58418 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN1P58418 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
CLRN1P58418 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC14.19□□□□□ -0.14
CLRN1P58418 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC14.19□□□□□ -0.14
CLRN1P58418 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN1P58418 MBP-202ENST00000355994 2772 ntTSL 5 BASIC14.19□□□□□ -0.14
CLRN1P58418 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
CLRN1P58418 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.19□□□□□ -0.14
CLRN1P58418 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC14.19□□□□□ -0.14
CLRN1P58418 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 62.8 ms