Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
HDAC4P56524 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.58■□□□□ 0.25
HDAC4P56524 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
HDAC4P56524 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.58■□□□□ 0.25
HDAC4P56524 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
HDAC4P56524 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.58■□□□□ 0.25
HDAC4P56524 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC4P56524 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC4P56524 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC4P56524 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC4P56524 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
HDAC4P56524 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
HDAC4P56524 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
HDAC4P56524 FO393414.2-201ENST00000405153 598 ntBASIC16.58■□□□□ 0.24
HDAC4P56524 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC16.58■□□□□ 0.24
HDAC4P56524 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC4P56524 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.58■□□□□ 0.24
HDAC4P56524 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC16.58■□□□□ 0.24
HDAC4P56524 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.58■□□□□ 0.24
HDAC4P56524 HLA-V-204ENST00000476601 1289 ntBASIC16.58■□□□□ 0.24
HDAC4P56524 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.58■□□□□ 0.24
HDAC4P56524 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC4P56524 AC140878.1-201ENST00000565277 250 ntBASIC16.58■□□□□ 0.24
HDAC4P56524 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC16.58■□□□□ 0.24
HDAC4P56524 AL138828.2-201ENST00000615812 383 ntBASIC16.58■□□□□ 0.24
HDAC4P56524 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
HDAC4P56524 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC4P56524 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
HDAC4P56524 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC4P56524 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC4P56524 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC4P56524 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
HDAC4P56524 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC4P56524 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC4P56524 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC4P56524 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC4P56524 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC4P56524 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC4P56524 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.58■□□□□ 0.24
HDAC4P56524 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
HDAC4P56524 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.58■□□□□ 0.24
HDAC4P56524 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.58■□□□□ 0.24
HDAC4P56524 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.58■□□□□ 0.24
HDAC4P56524 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
HDAC4P56524 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC4P56524 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC4P56524 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC4P56524 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.57■□□□□ 0.24
HDAC4P56524 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC4P56524 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.57■□□□□ 0.24
HDAC4P56524 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.57■□□□□ 0.24
HDAC4P56524 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC4P56524 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.57■□□□□ 0.24
HDAC4P56524 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
HDAC4P56524 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC16.57■□□□□ 0.24
HDAC4P56524 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC4P56524 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC4P56524 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.57■□□□□ 0.24
HDAC4P56524 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC4P56524 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
HDAC4P56524 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC4P56524 FO538757.1-201ENST00000623083 1397 ntBASIC16.57■□□□□ 0.24
HDAC4P56524 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.57■□□□□ 0.24
HDAC4P56524 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC4P56524 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC4P56524 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.57■□□□□ 0.24
HDAC4P56524 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.57■□□□□ 0.24
HDAC4P56524 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC16.57■□□□□ 0.24
HDAC4P56524 AC107890.1-201ENST00000422478 521 ntBASIC16.57■□□□□ 0.24
HDAC4P56524 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.57■□□□□ 0.24
HDAC4P56524 FAM86GP-201ENST00000448322 971 ntBASIC16.57■□□□□ 0.24
HDAC4P56524 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC16.57■□□□□ 0.24
HDAC4P56524 AC092183.1-201ENST00000469884 875 ntBASIC16.57■□□□□ 0.24
HDAC4P56524 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.57■□□□□ 0.24
HDAC4P56524 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.57■□□□□ 0.24
HDAC4P56524 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
HDAC4P56524 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC4P56524 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.57■□□□□ 0.24
HDAC4P56524 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC16.57■□□□□ 0.24
HDAC4P56524 TEX28P1-201ENST00000613479 1221 ntBASIC16.57■□□□□ 0.24
HDAC4P56524 TEX28P2-201ENST00000617764 1221 ntBASIC16.57■□□□□ 0.24
HDAC4P56524 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC4P56524 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC4P56524 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC4P56524 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
HDAC4P56524 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC4P56524 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
HDAC4P56524 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC4P56524 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
HDAC4P56524 AC092127.1-201ENST00000567093 3455 ntBASIC16.57■□□□□ 0.24
HDAC4P56524 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC4P56524 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.57■□□□□ 0.24
HDAC4P56524 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC4P56524 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC4P56524 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC4P56524 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC4P56524 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC4P56524 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.56■□□□□ 0.24
HDAC4P56524 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
HDAC4P56524 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 65.8 ms