Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VCPP55072 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
VCPP55072 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VCPP55072 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VCPP55072 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC17.01■□□□□ 0.31
VCPP55072 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
VCPP55072 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
VCPP55072 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC17.01■□□□□ 0.31
VCPP55072 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VCPP55072 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VCPP55072 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VCPP55072 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC17.01■□□□□ 0.31
VCPP55072 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VCPP55072 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VCPP55072 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.01■□□□□ 0.31
VCPP55072 AC234783.1-201ENST00000441761 496 ntBASIC17.01■□□□□ 0.31
VCPP55072 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
VCPP55072 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC17.01■□□□□ 0.31
VCPP55072 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VCPP55072 AP005482.1-201ENST00000563722 1273 ntBASIC17.01■□□□□ 0.31
VCPP55072 AC073389.1-201ENST00000595595 795 ntBASIC17.01■□□□□ 0.31
VCPP55072 RETN-203ENST00000629642 400 ntTSL 5 BASIC17.01■□□□□ 0.31
VCPP55072 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC17.01■□□□□ 0.31
VCPP55072 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VCPP55072 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC17.01■□□□□ 0.31
VCPP55072 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VCPP55072 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC17.01■□□□□ 0.31
VCPP55072 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VCPP55072 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VCPP55072 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VCPP55072 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VCPP55072 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VCPP55072 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VCPP55072 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC17.01■□□□□ 0.31
VCPP55072 CDC14C-201ENST00000428251 1719 ntBASIC17.01■□□□□ 0.31
VCPP55072 AC005622.1-201ENST00000636801 1703 ntBASIC17.01■□□□□ 0.31
VCPP55072 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC17.01■□□□□ 0.31
VCPP55072 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VCPP55072 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
VCPP55072 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VCPP55072 AL592424.1-201ENST00000563624 1536 ntBASIC17.01■□□□□ 0.31
VCPP55072 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.01■□□□□ 0.31
VCPP55072 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VCPP55072 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
VCPP55072 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17■□□□□ 0.31
VCPP55072 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VCPP55072 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
VCPP55072 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VCPP55072 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VCPP55072 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17■□□□□ 0.31
VCPP55072 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC17■□□□□ 0.31
VCPP55072 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VCPP55072 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VCPP55072 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC17■□□□□ 0.31
VCPP55072 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC17■□□□□ 0.31
VCPP55072 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
VCPP55072 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
VCPP55072 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
VCPP55072 SPDYE19P-201ENST00000338590 713 ntBASIC17■□□□□ 0.31
VCPP55072 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VCPP55072 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
VCPP55072 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC17■□□□□ 0.31
VCPP55072 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VCPP55072 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC17■□□□□ 0.31
VCPP55072 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VCPP55072 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC17■□□□□ 0.31
VCPP55072 RPL37AP1-201ENST00000412502 279 ntBASIC17■□□□□ 0.31
VCPP55072 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC17■□□□□ 0.31
VCPP55072 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VCPP55072 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC17■□□□□ 0.31
VCPP55072 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
VCPP55072 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
VCPP55072 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC17■□□□□ 0.31
VCPP55072 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC17■□□□□ 0.31
VCPP55072 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC17■□□□□ 0.31
VCPP55072 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC17■□□□□ 0.31
VCPP55072 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17■□□□□ 0.31
VCPP55072 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17■□□□□ 0.31
VCPP55072 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
VCPP55072 LINC02447-202ENST00000501888 2146 ntBASIC17■□□□□ 0.31
VCPP55072 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VCPP55072 AC112504.1-201ENST00000623415 1841 ntBASIC17■□□□□ 0.31
VCPP55072 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
VCPP55072 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
VCPP55072 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
VCPP55072 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
VCPP55072 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VCPP55072 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
VCPP55072 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
VCPP55072 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VCPP55072 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.99■□□□□ 0.31
VCPP55072 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VCPP55072 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.99■□□□□ 0.31
VCPP55072 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
VCPP55072 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
VCPP55072 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VCPP55072 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.99■□□□□ 0.31
VCPP55072 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.99■□□□□ 0.31
VCPP55072 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC16.99■□□□□ 0.31
VCPP55072 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms