Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC16.48■□□□□ 0.23
EPHB3P54753 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC16.48■□□□□ 0.23
EPHB3P54753 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
EPHB3P54753 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC16.48■□□□□ 0.23
EPHB3P54753 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.48■□□□□ 0.23
EPHB3P54753 AC068587.3-201ENST00000526613 355 ntBASIC16.48■□□□□ 0.23
EPHB3P54753 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC16.48■□□□□ 0.23
EPHB3P54753 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.48■□□□□ 0.23
EPHB3P54753 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC16.48■□□□□ 0.23
EPHB3P54753 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC16.48■□□□□ 0.23
EPHB3P54753 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
EPHB3P54753 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC16.48■□□□□ 0.23
EPHB3P54753 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
EPHB3P54753 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.48■□□□□ 0.23
EPHB3P54753 AC020916.1-201ENST00000587762 1774 ntBASIC16.48■□□□□ 0.23
EPHB3P54753 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
EPHB3P54753 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
EPHB3P54753 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.48■□□□□ 0.23
EPHB3P54753 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.48■□□□□ 0.23
EPHB3P54753 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
EPHB3P54753 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.48■□□□□ 0.23
EPHB3P54753 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
EPHB3P54753 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
EPHB3P54753 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
EPHB3P54753 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
EPHB3P54753 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
EPHB3P54753 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
EPHB3P54753 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
EPHB3P54753 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
EPHB3P54753 MTHFR-217ENST00000641820 1569 ntBASIC16.47■□□□□ 0.23
EPHB3P54753 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
EPHB3P54753 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
EPHB3P54753 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
EPHB3P54753 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
EPHB3P54753 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.47■□□□□ 0.23
EPHB3P54753 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
EPHB3P54753 TK1-203ENST00000588734 1681 ntTSL 2 BASIC16.47■□□□□ 0.23
EPHB3P54753 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.47■□□□□ 0.23
EPHB3P54753 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
EPHB3P54753 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
EPHB3P54753 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
EPHB3P54753 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
EPHB3P54753 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
EPHB3P54753 AL133267.1-201ENST00000398220 340 ntBASIC16.47■□□□□ 0.23
EPHB3P54753 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
EPHB3P54753 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
EPHB3P54753 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
EPHB3P54753 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
EPHB3P54753 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC16.47■□□□□ 0.23
EPHB3P54753 AL355864.2-201ENST00000447420 863 ntBASIC16.47■□□□□ 0.23
EPHB3P54753 SNX29P1-201ENST00000548357 1007 ntBASIC16.47■□□□□ 0.23
EPHB3P54753 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC16.47■□□□□ 0.23
EPHB3P54753 GPX4-206ENST00000588919 803 ntTSL 2 BASIC16.47■□□□□ 0.23
EPHB3P54753 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
EPHB3P54753 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
EPHB3P54753 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
EPHB3P54753 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
EPHB3P54753 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
EPHB3P54753 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.47■□□□□ 0.23
EPHB3P54753 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC16.47■□□□□ 0.23
EPHB3P54753 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
EPHB3P54753 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
EPHB3P54753 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
EPHB3P54753 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
EPHB3P54753 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
EPHB3P54753 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
EPHB3P54753 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
EPHB3P54753 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
EPHB3P54753 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
EPHB3P54753 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.47■□□□□ 0.23
EPHB3P54753 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
EPHB3P54753 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
EPHB3P54753 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
EPHB3P54753 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
EPHB3P54753 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
EPHB3P54753 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
EPHB3P54753 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.46■□□□□ 0.23
EPHB3P54753 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
EPHB3P54753 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.46■□□□□ 0.23
EPHB3P54753 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC16.46■□□□□ 0.23
EPHB3P54753 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.23
EPHB3P54753 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
EPHB3P54753 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.46■□□□□ 0.23
EPHB3P54753 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
EPHB3P54753 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.46■□□□□ 0.23
EPHB3P54753 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.46■□□□□ 0.23
EPHB3P54753 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.46■□□□□ 0.23
EPHB3P54753 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC16.46■□□□□ 0.23
EPHB3P54753 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
EPHB3P54753 AC005229.1-201ENST00000392885 409 ntBASIC16.46■□□□□ 0.23
EPHB3P54753 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC16.46■□□□□ 0.23
EPHB3P54753 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
EPHB3P54753 RPL28-203ENST00000428193 573 ntTSL 2 BASIC16.46■□□□□ 0.23
EPHB3P54753 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
EPHB3P54753 BCRP2-202ENST00000447763 634 ntBASIC16.46■□□□□ 0.23
EPHB3P54753 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
EPHB3P54753 BCRP6-201ENST00000510112 632 ntBASIC16.46■□□□□ 0.23
EPHB3P54753 BCRP7-201ENST00000511549 544 ntBASIC16.46■□□□□ 0.23
EPHB3P54753 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
EPHB3P54753 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms