Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
MSH6P52701 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC21.59■■□□□ 1.05
MSH6P52701 RN7SL181P-201ENST00000462921 277 ntBASIC21.59■■□□□ 1.05
MSH6P52701 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC21.59■■□□□ 1.05
MSH6P52701 AC106794.1-201ENST00000506935 792 ntBASIC21.59■■□□□ 1.05
MSH6P52701 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC21.59■■□□□ 1.05
MSH6P52701 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC21.59■■□□□ 1.05
MSH6P52701 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC21.59■■□□□ 1.05
MSH6P52701 RN7SL713P-201ENST00000582127 302 ntBASIC21.59■■□□□ 1.05
MSH6P52701 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC21.59■■□□□ 1.05
MSH6P52701 ZACNP1-201ENST00000612259 710 ntBASIC21.59■■□□□ 1.05
MSH6P52701 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC21.59■■□□□ 1.05
MSH6P52701 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH6P52701 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
MSH6P52701 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC21.58■■□□□ 1.05
MSH6P52701 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH6P52701 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH6P52701 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
MSH6P52701 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH6P52701 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC21.58■■□□□ 1.05
MSH6P52701 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH6P52701 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
MSH6P52701 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH6P52701 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH6P52701 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.04
MSH6P52701 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
MSH6P52701 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
MSH6P52701 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC21.58■■□□□ 1.04
MSH6P52701 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC21.58■■□□□ 1.04
MSH6P52701 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC21.58■■□□□ 1.04
MSH6P52701 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC21.58■■□□□ 1.04
MSH6P52701 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC21.58■■□□□ 1.04
MSH6P52701 SYT17-208ENST00000568433 812 ntTSL 3 BASIC21.58■■□□□ 1.04
MSH6P52701 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
MSH6P52701 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
MSH6P52701 AP001002.3-201ENST00000623482 206 ntBASIC21.58■■□□□ 1.04
MSH6P52701 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
MSH6P52701 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
MSH6P52701 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
MSH6P52701 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
MSH6P52701 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC21.58■■□□□ 1.04
MSH6P52701 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC21.58■■□□□ 1.04
MSH6P52701 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
MSH6P52701 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
MSH6P52701 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
MSH6P52701 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
MSH6P52701 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
MSH6P52701 POLL-217ENST00000628479 1953 ntTSL 5 BASIC21.57■■□□□ 1.04
MSH6P52701 AC148477.4-201ENST00000613430 1793 ntBASIC21.57■■□□□ 1.04
MSH6P52701 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
MSH6P52701 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH6P52701 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
MSH6P52701 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
MSH6P52701 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH6P52701 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
MSH6P52701 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC21.57■■□□□ 1.04
MSH6P52701 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH6P52701 DPM3-202ENST00000368399 517 ntBASIC21.57■■□□□ 1.04
MSH6P52701 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH6P52701 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC21.57■■□□□ 1.04
MSH6P52701 AC019193.1-201ENST00000506678 823 ntBASIC21.57■■□□□ 1.04
MSH6P52701 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC21.57■■□□□ 1.04
MSH6P52701 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC21.57■■□□□ 1.04
MSH6P52701 AC073413.1-201ENST00000603927 732 ntBASIC21.57■■□□□ 1.04
MSH6P52701 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC21.57■■□□□ 1.04
MSH6P52701 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC21.57■■□□□ 1.04
MSH6P52701 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
MSH6P52701 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
MSH6P52701 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH6P52701 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
MSH6P52701 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH6P52701 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC21.56■■□□□ 1.04
MSH6P52701 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC21.56■■□□□ 1.04
MSH6P52701 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH6P52701 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
MSH6P52701 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH6P52701 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH6P52701 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH6P52701 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
MSH6P52701 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH6P52701 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH6P52701 AC005915.1-201ENST00000624912 2018 ntBASIC21.56■■□□□ 1.04
MSH6P52701 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC21.56■■□□□ 1.04
MSH6P52701 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC21.56■■□□□ 1.04
MSH6P52701 RPL13AP19-201ENST00000434320 584 ntBASIC21.56■■□□□ 1.04
MSH6P52701 HIST2H2BB-201ENST00000449108 381 ntBASIC21.56■■□□□ 1.04
MSH6P52701 NOC2LP1-201ENST00000450578 752 ntBASIC21.56■■□□□ 1.04
MSH6P52701 KRT18P66-201ENST00000452970 1269 ntBASIC21.56■■□□□ 1.04
MSH6P52701 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC21.56■■□□□ 1.04
MSH6P52701 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC21.56■■□□□ 1.04
MSH6P52701 AL353770.1-201ENST00000614915 403 ntBASIC21.56■■□□□ 1.04
MSH6P52701 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC21.56■■□□□ 1.04
MSH6P52701 AL023803.2-201ENST00000620080 638 ntBASIC21.56■■□□□ 1.04
MSH6P52701 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH6P52701 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH6P52701 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
MSH6P52701 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH6P52701 AC022211.2-201ENST00000585075 2527 ntBASIC21.56■■□□□ 1.04
MSH6P52701 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH6P52701 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms