Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL18A1P39060 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
COL18A1P39060 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC20.39■□□□□ 0.85
COL18A1P39060 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
COL18A1P39060 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL18A1P39060 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL18A1P39060 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL18A1P39060 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL18A1P39060 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL18A1P39060 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL18A1P39060 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL18A1P39060 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL18A1P39060 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL18A1P39060 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC20.39■□□□□ 0.85
COL18A1P39060 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC20.39■□□□□ 0.85
COL18A1P39060 FTLP1-201ENST00000449155 526 ntBASIC20.39■□□□□ 0.85
COL18A1P39060 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC20.39■□□□□ 0.85
COL18A1P39060 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC20.39■□□□□ 0.85
COL18A1P39060 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL18A1P39060 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC20.38■□□□□ 0.85
COL18A1P39060 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC20.38■□□□□ 0.85
COL18A1P39060 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC20.38■□□□□ 0.85
COL18A1P39060 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL18A1P39060 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
COL18A1P39060 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC20.38■□□□□ 0.85
COL18A1P39060 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC20.38■□□□□ 0.85
COL18A1P39060 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL18A1P39060 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL18A1P39060 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL18A1P39060 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
COL18A1P39060 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
COL18A1P39060 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC20.38■□□□□ 0.85
COL18A1P39060 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL18A1P39060 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL18A1P39060 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC20.38■□□□□ 0.85
COL18A1P39060 AC116345.2-201ENST00000512837 523 ntBASIC20.38■□□□□ 0.85
COL18A1P39060 AL160314.3-201ENST00000556041 767 ntBASIC20.38■□□□□ 0.85
COL18A1P39060 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL18A1P39060 AL358472.3-201ENST00000608147 415 ntBASIC20.38■□□□□ 0.85
COL18A1P39060 AC068587.8-201ENST00000641239 219 ntBASIC20.38■□□□□ 0.85
COL18A1P39060 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL18A1P39060 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL18A1P39060 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL18A1P39060 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC20.38■□□□□ 0.85
COL18A1P39060 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC20.38■□□□□ 0.85
COL18A1P39060 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL18A1P39060 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL18A1P39060 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
COL18A1P39060 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
COL18A1P39060 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL18A1P39060 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC20.37■□□□□ 0.85
COL18A1P39060 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL18A1P39060 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC20.37■□□□□ 0.85
COL18A1P39060 AC009955.4-201ENST00000597192 544 ntBASIC20.37■□□□□ 0.85
COL18A1P39060 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC20.37■□□□□ 0.85
COL18A1P39060 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL18A1P39060 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC20.37■□□□□ 0.85
COL18A1P39060 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL18A1P39060 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL18A1P39060 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL18A1P39060 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL18A1P39060 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC20.37■□□□□ 0.85
COL18A1P39060 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL18A1P39060 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC20.37■□□□□ 0.85
COL18A1P39060 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL18A1P39060 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL18A1P39060 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL18A1P39060 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC20.37■□□□□ 0.85
COL18A1P39060 AC055811.4-201ENST00000624039 1754 ntBASIC20.37■□□□□ 0.85
COL18A1P39060 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL18A1P39060 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL18A1P39060 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL18A1P39060 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL18A1P39060 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL18A1P39060 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL18A1P39060 MPRIPP1-201ENST00000452433 1089 ntBASIC20.36■□□□□ 0.85
COL18A1P39060 RNMTL1P1-201ENST00000454103 560 ntBASIC20.36■□□□□ 0.85
COL18A1P39060 OARD1-204ENST00000464633 717 ntTSL 2 BASIC20.36■□□□□ 0.85
COL18A1P39060 MESTP3-201ENST00000503460 968 ntBASIC20.36■□□□□ 0.85
COL18A1P39060 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC20.36■□□□□ 0.85
COL18A1P39060 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC20.36■□□□□ 0.85
COL18A1P39060 MIR4683-201ENST00000579659 81 ntBASIC20.36■□□□□ 0.85
COL18A1P39060 AC005324.6-201ENST00000587972 613 ntBASIC20.36■□□□□ 0.85
COL18A1P39060 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC20.36■□□□□ 0.85
COL18A1P39060 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC20.36■□□□□ 0.85
COL18A1P39060 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL18A1P39060 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL18A1P39060 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL18A1P39060 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL18A1P39060 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL18A1P39060 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL18A1P39060 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL18A1P39060 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL18A1P39060 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
COL18A1P39060 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
COL18A1P39060 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
COL18A1P39060 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC20.36■□□□□ 0.85
COL18A1P39060 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC20.36■□□□□ 0.85
COL18A1P39060 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL18A1P39060 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms