Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC14.55□□□□□ -0.08
MSX1P28360 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC14.55□□□□□ -0.08
MSX1P28360 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX1P28360 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC14.54□□□□□ -0.08
MSX1P28360 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC14.54□□□□□ -0.08
MSX1P28360 AL365203.3-201ENST00000609742 2057 ntBASIC14.54□□□□□ -0.08
MSX1P28360 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
MSX1P28360 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
MSX1P28360 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
MSX1P28360 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX1P28360 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX1P28360 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
MSX1P28360 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
MSX1P28360 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX1P28360 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
MSX1P28360 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX1P28360 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
MSX1P28360 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX1P28360 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX1P28360 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC14.54□□□□□ -0.08
MSX1P28360 RPL37AP1-201ENST00000412502 279 ntBASIC14.54□□□□□ -0.08
MSX1P28360 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
MSX1P28360 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC14.54□□□□□ -0.08
MSX1P28360 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC14.54□□□□□ -0.08
MSX1P28360 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC14.54□□□□□ -0.08
MSX1P28360 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX1P28360 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.54□□□□□ -0.08
MSX1P28360 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC14.54□□□□□ -0.08
MSX1P28360 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
MSX1P28360 AL359881.2-201ENST00000602973 570 ntBASIC14.54□□□□□ -0.08
MSX1P28360 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
MSX1P28360 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX1P28360 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
MSX1P28360 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX1P28360 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX1P28360 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
MSX1P28360 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC14.54□□□□□ -0.08
MSX1P28360 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX1P28360 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX1P28360 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX1P28360 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
MSX1P28360 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC14.54□□□□□ -0.08
MSX1P28360 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
MSX1P28360 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
MSX1P28360 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX1P28360 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
MSX1P28360 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
MSX1P28360 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC14.53□□□□□ -0.08
MSX1P28360 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC14.53□□□□□ -0.08
MSX1P28360 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
MSX1P28360 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC14.53□□□□□ -0.08
MSX1P28360 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX1P28360 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
MSX1P28360 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX1P28360 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.53□□□□□ -0.08
MSX1P28360 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX1P28360 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC14.53□□□□□ -0.08
MSX1P28360 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
MSX1P28360 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
MSX1P28360 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
MSX1P28360 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX1P28360 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
MSX1P28360 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
MSX1P28360 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX1P28360 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
MSX1P28360 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.53□□□□□ -0.08
MSX1P28360 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
MSX1P28360 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC14.53□□□□□ -0.08
MSX1P28360 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.53□□□□□ -0.08
MSX1P28360 AC007274.1-201ENST00000439805 662 ntBASIC14.53□□□□□ -0.08
MSX1P28360 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX1P28360 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
MSX1P28360 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC14.53□□□□□ -0.08
MSX1P28360 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.53□□□□□ -0.08
MSX1P28360 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC14.53□□□□□ -0.08
MSX1P28360 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC14.53□□□□□ -0.08
MSX1P28360 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC14.53□□□□□ -0.08
MSX1P28360 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX1P28360 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.53□□□□□ -0.08
MSX1P28360 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX1P28360 TEX28P1-201ENST00000613479 1221 ntBASIC14.53□□□□□ -0.08
MSX1P28360 TEX28P2-201ENST00000617764 1221 ntBASIC14.53□□□□□ -0.08
MSX1P28360 SRP9-204ENST00000619790 377 ntTSL 2 BASIC14.53□□□□□ -0.08
MSX1P28360 AL033527.5-202ENST00000641632 1098 ntBASIC14.53□□□□□ -0.08
MSX1P28360 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
MSX1P28360 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
MSX1P28360 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC14.53□□□□□ -0.08
MSX1P28360 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
MSX1P28360 PCDHA1-201ENST00000378133 2726 ntBASIC14.53□□□□□ -0.08
MSX1P28360 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX1P28360 SUPT20HL2-201ENST00000486479 2409 ntBASIC14.53□□□□□ -0.08
MSX1P28360 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX1P28360 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX1P28360 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX1P28360 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX1P28360 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.53□□□□□ -0.08
MSX1P28360 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX1P28360 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC14.53□□□□□ -0.08
MSX1P28360 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC14.53□□□□□ -0.08
MSX1P28360 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms