Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC18.68■□□□□ 0.58
HMGB1P09429 AC140878.1-201ENST00000565277 250 ntBASIC18.68■□□□□ 0.58
HMGB1P09429 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC18.68■□□□□ 0.58
HMGB1P09429 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
HMGB1P09429 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
HMGB1P09429 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB1P09429 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB1P09429 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB1P09429 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB1P09429 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB1P09429 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC18.67■□□□□ 0.58
HMGB1P09429 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB1P09429 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB1P09429 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB1P09429 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC18.67■□□□□ 0.58
HMGB1P09429 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB1P09429 ING5-213ENST00000636051 4199 ntTSL 5 BASIC18.67■□□□□ 0.58
HMGB1P09429 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC18.67■□□□□ 0.58
HMGB1P09429 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB1P09429 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
HMGB1P09429 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB1P09429 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB1P09429 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC18.67■□□□□ 0.58
HMGB1P09429 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB1P09429 BAD-202ENST00000394531 631 ntTSL 3 BASIC18.67■□□□□ 0.58
HMGB1P09429 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC18.67■□□□□ 0.58
HMGB1P09429 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC18.67■□□□□ 0.58
HMGB1P09429 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB1P09429 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC18.67■□□□□ 0.58
HMGB1P09429 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC18.67■□□□□ 0.58
HMGB1P09429 AC069120.2-201ENST00000524091 540 ntBASIC18.67■□□□□ 0.58
HMGB1P09429 BAD-207ENST00000544785 525 ntTSL 3 BASIC18.67■□□□□ 0.58
HMGB1P09429 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
HMGB1P09429 CMC2-214ENST00000565925 640 ntTSL 5 BASIC18.67■□□□□ 0.58
HMGB1P09429 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC18.67■□□□□ 0.58
HMGB1P09429 TEX28P1-201ENST00000613479 1221 ntBASIC18.67■□□□□ 0.58
HMGB1P09429 TEX28P2-201ENST00000617764 1221 ntBASIC18.67■□□□□ 0.58
HMGB1P09429 SPDYE12P-201ENST00000618416 771 ntBASIC18.67■□□□□ 0.58
HMGB1P09429 AC073592.8-201ENST00000624126 511 ntBASIC18.67■□□□□ 0.58
HMGB1P09429 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB1P09429 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
HMGB1P09429 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB1P09429 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC18.67■□□□□ 0.58
HMGB1P09429 AC013268.4-201ENST00000637413 2228 ntBASIC18.67■□□□□ 0.58
HMGB1P09429 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB1P09429 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
HMGB1P09429 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC18.67■□□□□ 0.58
HMGB1P09429 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
HMGB1P09429 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB1P09429 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB1P09429 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC18.67■□□□□ 0.58
HMGB1P09429 GSN-206ENST00000394353 2311 ntTSL 2 BASIC18.67■□□□□ 0.58
HMGB1P09429 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC18.67■□□□□ 0.58
HMGB1P09429 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB1P09429 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB1P09429 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB1P09429 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
HMGB1P09429 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB1P09429 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB1P09429 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC18.66■□□□□ 0.58
HMGB1P09429 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC18.66■□□□□ 0.58
HMGB1P09429 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB1P09429 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB1P09429 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
HMGB1P09429 API5-202ENST00000420461 2009 ntTSL 2 BASIC18.66■□□□□ 0.58
HMGB1P09429 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB1P09429 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
HMGB1P09429 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC18.66■□□□□ 0.58
HMGB1P09429 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB1P09429 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB1P09429 AC107890.1-201ENST00000422478 521 ntBASIC18.66■□□□□ 0.58
HMGB1P09429 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB1P09429 LY6E-204ENST00000519546 971 ntTSL 2 BASIC18.66■□□□□ 0.58
HMGB1P09429 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC18.66■□□□□ 0.58
HMGB1P09429 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC18.66■□□□□ 0.58
HMGB1P09429 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC18.66■□□□□ 0.58
HMGB1P09429 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.66■□□□□ 0.58
HMGB1P09429 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC18.66■□□□□ 0.58
HMGB1P09429 AL138828.2-201ENST00000615812 383 ntBASIC18.66■□□□□ 0.58
HMGB1P09429 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC18.66■□□□□ 0.58
HMGB1P09429 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB1P09429 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms