Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
CD74P04233 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
CD74P04233 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC13.36□□□□□ -0.27
CD74P04233 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
CD74P04233 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC13.36□□□□□ -0.27
CD74P04233 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC13.36□□□□□ -0.27
CD74P04233 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC13.36□□□□□ -0.27
CD74P04233 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC13.36□□□□□ -0.27
CD74P04233 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
CD74P04233 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC13.36□□□□□ -0.27
CD74P04233 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
CD74P04233 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
CD74P04233 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 MRPL20P1-201ENST00000400819 433 ntBASIC13.36□□□□□ -0.27
CD74P04233 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC13.36□□□□□ -0.27
CD74P04233 ATP5G2P1-201ENST00000433580 426 ntBASIC13.36□□□□□ -0.27
CD74P04233 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC13.36□□□□□ -0.27
CD74P04233 AC021087.4-201ENST00000563761 564 ntBASIC13.36□□□□□ -0.27
CD74P04233 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC13.36□□□□□ -0.27
CD74P04233 NT5C-211ENST00000582170 653 ntTSL 3 BASIC13.36□□□□□ -0.27
CD74P04233 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC13.36□□□□□ -0.27
CD74P04233 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
CD74P04233 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
CD74P04233 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 REXO1L1P-202ENST00000608646 1974 ntBASIC13.36□□□□□ -0.27
CD74P04233 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
CD74P04233 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC13.36□□□□□ -0.27
CD74P04233 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CD74P04233 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CD74P04233 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC13.35□□□□□ -0.27
CD74P04233 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CD74P04233 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CD74P04233 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CD74P04233 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC13.35□□□□□ -0.27
CD74P04233 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CD74P04233 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CD74P04233 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CD74P04233 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CD74P04233 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CD74P04233 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CD74P04233 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC13.35□□□□□ -0.27
CD74P04233 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CD74P04233 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CD74P04233 AL365209.1-201ENST00000624418 6473 ntBASIC13.35□□□□□ -0.27
CD74P04233 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CD74P04233 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CD74P04233 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC13.35□□□□□ -0.27
CD74P04233 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CD74P04233 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CD74P04233 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC13.35□□□□□ -0.27
CD74P04233 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CD74P04233 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
CD74P04233 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
CD74P04233 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CD74P04233 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC13.35□□□□□ -0.27
CD74P04233 ISCU-203ENST00000431221 799 ntTSL 2 BASIC13.35□□□□□ -0.27
CD74P04233 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC13.35□□□□□ -0.27
CD74P04233 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
CD74P04233 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC13.35□□□□□ -0.27
CD74P04233 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC13.35□□□□□ -0.27
CD74P04233 IRF8-202ENST00000562492 946 ntTSL 3 BASIC13.35□□□□□ -0.27
CD74P04233 RMI2-205ENST00000576027 818 ntTSL 2 BASIC13.35□□□□□ -0.27
CD74P04233 PNMT-203ENST00000581428 677 ntTSL 2 BASIC13.35□□□□□ -0.27
CD74P04233 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC13.35□□□□□ -0.27
CD74P04233 AL078644.1-201ENST00000609881 752 ntBASIC13.35□□□□□ -0.27
CD74P04233 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC13.35□□□□□ -0.27
CD74P04233 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC13.35□□□□□ -0.27
CD74P04233 BNIP3P1-202ENST00000550043 1585 ntBASIC13.35□□□□□ -0.27
CD74P04233 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CD74P04233 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CD74P04233 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CD74P04233 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CD74P04233 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
CD74P04233 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CD74P04233 PPP1R26P4-201ENST00000619065 3527 ntBASIC13.35□□□□□ -0.27
CD74P04233 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms