Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
TOP3BO95985 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.31■□□□□ 0.2
TOP3BO95985 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
TOP3BO95985 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TOP3BO95985 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TOP3BO95985 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.3■□□□□ 0.2
TOP3BO95985 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TOP3BO95985 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.3■□□□□ 0.2
TOP3BO95985 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TOP3BO95985 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TOP3BO95985 AL592424.1-201ENST00000563624 1536 ntBASIC16.3■□□□□ 0.2
TOP3BO95985 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TOP3BO95985 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
TOP3BO95985 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
TOP3BO95985 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TOP3BO95985 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TOP3BO95985 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.3■□□□□ 0.2
TOP3BO95985 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
TOP3BO95985 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.3■□□□□ 0.2
TOP3BO95985 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TOP3BO95985 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
TOP3BO95985 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TOP3BO95985 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TOP3BO95985 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TOP3BO95985 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TOP3BO95985 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TOP3BO95985 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
TOP3BO95985 HCG4-201ENST00000418983 998 ntBASIC16.3■□□□□ 0.2
TOP3BO95985 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC16.3■□□□□ 0.2
TOP3BO95985 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC16.3■□□□□ 0.2
TOP3BO95985 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.3■□□□□ 0.2
TOP3BO95985 AC092658.1-201ENST00000505836 891 ntBASIC16.3■□□□□ 0.2
TOP3BO95985 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TOP3BO95985 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
TOP3BO95985 AC132938.2-201ENST00000579188 680 ntBASIC16.3■□□□□ 0.2
TOP3BO95985 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.3■□□□□ 0.2
TOP3BO95985 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
TOP3BO95985 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.3■□□□□ 0.2
TOP3BO95985 AL591163.1-201ENST00000641757 987 ntBASIC16.3■□□□□ 0.2
TOP3BO95985 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TOP3BO95985 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TOP3BO95985 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TOP3BO95985 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TOP3BO95985 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
TOP3BO95985 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TOP3BO95985 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TOP3BO95985 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.3■□□□□ 0.2
TOP3BO95985 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TOP3BO95985 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TOP3BO95985 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
TOP3BO95985 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
TOP3BO95985 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
TOP3BO95985 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TOP3BO95985 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
TOP3BO95985 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TOP3BO95985 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TOP3BO95985 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TOP3BO95985 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TOP3BO95985 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TOP3BO95985 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TOP3BO95985 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
TOP3BO95985 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TOP3BO95985 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
TOP3BO95985 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TOP3BO95985 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.29■□□□□ 0.2
TOP3BO95985 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.29■□□□□ 0.2
TOP3BO95985 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.29■□□□□ 0.2
TOP3BO95985 HMGA1P7-201ENST00000406908 502 ntBASIC16.29■□□□□ 0.2
TOP3BO95985 AC112492.5-201ENST00000421897 457 ntBASIC16.29■□□□□ 0.2
TOP3BO95985 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC16.29■□□□□ 0.2
TOP3BO95985 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.29■□□□□ 0.2
TOP3BO95985 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.29■□□□□ 0.2
TOP3BO95985 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
TOP3BO95985 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC16.29■□□□□ 0.2
TOP3BO95985 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.29■□□□□ 0.2
TOP3BO95985 AC020765.3-201ENST00000613051 740 ntBASIC16.29■□□□□ 0.2
TOP3BO95985 AL161645.1-201ENST00000622716 1255 ntBASIC16.29■□□□□ 0.2
TOP3BO95985 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TOP3BO95985 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
TOP3BO95985 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TOP3BO95985 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TOP3BO95985 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.29■□□□□ 0.2
TOP3BO95985 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TOP3BO95985 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TOP3BO95985 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TOP3BO95985 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.29■□□□□ 0.2
TOP3BO95985 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TOP3BO95985 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC16.29■□□□□ 0.2
TOP3BO95985 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
TOP3BO95985 AC007541.1-201ENST00000570282 1469 ntBASIC16.29■□□□□ 0.2
TOP3BO95985 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TOP3BO95985 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TOP3BO95985 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC16.28■□□□□ 0.2
TOP3BO95985 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.28■□□□□ 0.2
TOP3BO95985 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
TOP3BO95985 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
TOP3BO95985 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TOP3BO95985 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TOP3BO95985 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TOP3BO95985 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms