Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 AL592309.1-201ENST00000443127 649 ntBASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 ALG1L5P-201ENST00000482043 771 ntBASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 CCDC74BP1-201ENST00000508880 1123 ntBASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 SLC25A39P2-201ENST00000537614 270 ntBASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 MIR4313-201ENST00000580760 101 ntBASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 AC055717.3-201ENST00000622967 595 ntBASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 KRT8P37-201ENST00000451609 1420 ntBASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 AP3S2-216ENST00000617003 1561 ntBASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 AC092127.1-201ENST00000567093 3455 ntBASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 UXT-AS1-201ENST00000590504 1525 ntBASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 FABP5-202ENST00000396359 986 ntTSL 5 BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 MAX-210ENST00000555419 765 ntTSL 5 BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 NAA38-207ENST00000576861 556 ntTSL 3 BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 ELL2P1-201ENST00000413990 1906 ntBASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HIF3AQ9Y2N7 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 RARRES2P9-201ENST00000565168 469 ntBASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms