Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 AC136621.1-201ENST00000624017 2304 ntBASIC12.28□□□□□ -0.44
CCDC140Q96MF4 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC12.27□□□□□ -0.44
CCDC140Q96MF4 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
CCDC140Q96MF4 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
CCDC140Q96MF4 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
CCDC140Q96MF4 SSR4P1-203ENST00000599569 2260 ntBASIC12.27□□□□□ -0.44
CCDC140Q96MF4 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC12.27□□□□□ -0.44
CCDC140Q96MF4 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
CCDC140Q96MF4 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC12.27□□□□□ -0.44
CCDC140Q96MF4 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC12.27□□□□□ -0.44
CCDC140Q96MF4 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
CCDC140Q96MF4 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
CCDC140Q96MF4 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 HYMAI-201ENST00000635591 3347 ntBASIC12.27□□□□□ -0.45
CCDC140Q96MF4 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 CASK-202ENST00000378158 3848 ntTSL 5 BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 TREML5P-201ENST00000421694 576 ntBASIC12.27□□□□□ -0.45
CCDC140Q96MF4 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 AL512361.1-201ENST00000554200 418 ntBASIC12.27□□□□□ -0.45
CCDC140Q96MF4 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 AL158211.3-201ENST00000607385 239 ntBASIC12.27□□□□□ -0.45
CCDC140Q96MF4 MIR6069-201ENST00000620069 79 ntBASIC12.27□□□□□ -0.45
CCDC140Q96MF4 AL033527.5-202ENST00000641632 1098 ntBASIC12.27□□□□□ -0.45
CCDC140Q96MF4 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 AC127383.1-201ENST00000444697 1800 ntBASIC12.27□□□□□ -0.45
CCDC140Q96MF4 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 AC092384.3-202ENST00000564646 2873 ntBASIC12.27□□□□□ -0.45
CCDC140Q96MF4 AC090616.6-203ENST00000579186 1945 ntBASIC12.27□□□□□ -0.45
CCDC140Q96MF4 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 LTF-203ENST00000426532 2494 ntTSL 2 BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC12.27□□□□□ -0.45
CCDC140Q96MF4 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 LCK-206ENST00000373564 2137 ntTSL 5 BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 CENPM-205ENST00000404067 905 ntTSL 3 BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 CENPM-206ENST00000407253 818 ntTSL 2 BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 AC092580.3-201ENST00000430932 139 ntBASIC12.26□□□□□ -0.45
CCDC140Q96MF4 TARDBPP1-201ENST00000442013 1203 ntBASIC12.26□□□□□ -0.45
CCDC140Q96MF4 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms