Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4CQ96CF2 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC18.97■□□□□ 0.63
CHMP4CQ96CF2 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
CHMP4CQ96CF2 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC18.97■□□□□ 0.63
CHMP4CQ96CF2 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4CQ96CF2 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC18.97■□□□□ 0.63
CHMP4CQ96CF2 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4CQ96CF2 AC241585.1-201ENST00000433527 519 ntBASIC18.97■□□□□ 0.63
CHMP4CQ96CF2 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CHMP4CQ96CF2 MPI-209ENST00000564003 1195 ntTSL 2 BASIC18.97■□□□□ 0.63
CHMP4CQ96CF2 AC061975.2-201ENST00000581722 295 ntBASIC18.97■□□□□ 0.63
CHMP4CQ96CF2 AL133215.2-201ENST00000609242 977 ntBASIC18.97■□□□□ 0.63
CHMP4CQ96CF2 AJ011932.1-201ENST00000621707 465 ntBASIC18.97■□□□□ 0.63
CHMP4CQ96CF2 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4CQ96CF2 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4CQ96CF2 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4CQ96CF2 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC18.97■□□□□ 0.63
CHMP4CQ96CF2 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4CQ96CF2 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
CHMP4CQ96CF2 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4CQ96CF2 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
CHMP4CQ96CF2 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4CQ96CF2 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4CQ96CF2 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 AL035633.1-201ENST00000406139 838 ntBASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 MRPS18AP1-201ENST00000414458 589 ntBASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 AC002472.2-201ENST00000442739 958 ntBASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC18.96■□□□□ 0.63
CHMP4CQ96CF2 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.62
CHMP4CQ96CF2 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.62
CHMP4CQ96CF2 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.62
CHMP4CQ96CF2 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 NORAD-201ENST00000565493 5339 ntBASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 TSSK5P-201ENST00000423978 907 ntBASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 TMPRSS11CP-201ENST00000453277 683 ntBASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 AC004890.2-204ENST00000481968 304 ntBASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 NAA38-207ENST00000576861 556 ntTSL 3 BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 CETN4P-206ENST00000642099 2168 ntBASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4CQ96CF2 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 AL136982.4-201ENST00000437689 1740 ntBASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms