Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 ACTG1P22-201ENST00000603793 1099 ntBASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 AC004790.2-201ENST00000623588 572 ntBASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 AP003680.1-201ENST00000598970 3660 ntBASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 NMU-202ENST00000505262 693 ntTSL 3 BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 AC009446.1-201ENST00000519840 808 ntTSL 2 BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 MTDHP5-201ENST00000598980 586 ntBASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC14.89□□□□□ -0.03
DEPDC4Q8N2C3 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
DEPDC4Q8N2C3 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
DEPDC4Q8N2C3 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
DEPDC4Q8N2C3 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC14.88□□□□□ -0.03
DEPDC4Q8N2C3 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.88□□□□□ -0.03
DEPDC4Q8N2C3 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
DEPDC4Q8N2C3 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC14.88□□□□□ -0.03
DEPDC4Q8N2C3 AC138035.3-201ENST00000622706 2791 ntBASIC14.88□□□□□ -0.03
DEPDC4Q8N2C3 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
DEPDC4Q8N2C3 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
DEPDC4Q8N2C3 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
DEPDC4Q8N2C3 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
DEPDC4Q8N2C3 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
DEPDC4Q8N2C3 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
DEPDC4Q8N2C3 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
DEPDC4Q8N2C3 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
DEPDC4Q8N2C3 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC14.88□□□□□ -0.03
DEPDC4Q8N2C3 HCG4-201ENST00000418983 998 ntBASIC14.88□□□□□ -0.03
DEPDC4Q8N2C3 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC14.88□□□□□ -0.03
DEPDC4Q8N2C3 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC14.88□□□□□ -0.03
DEPDC4Q8N2C3 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
DEPDC4Q8N2C3 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms