Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 API5-211ENST00000534695 560 ntTSL 5 BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 AL596325.1-201ENST00000563991 1082 ntBASIC14.79□□□□□ -0.04
BEST3Q8N1M1 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 AC004461.2-201ENST00000629517 803 ntBASIC14.79□□□□□ -0.04
BEST3Q8N1M1 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 AC006449.5-201ENST00000610658 2098 ntBASIC14.78□□□□□ -0.04
BEST3Q8N1M1 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 DFFBP1-201ENST00000433250 979 ntBASIC14.78□□□□□ -0.04
BEST3Q8N1M1 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 TP53TG3HP-202ENST00000569755 579 ntBASIC14.78□□□□□ -0.04
BEST3Q8N1M1 AC140912.1-201ENST00000577171 1054 ntBASIC14.78□□□□□ -0.04
BEST3Q8N1M1 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 ME2P1-201ENST00000426028 1970 ntBASIC14.78□□□□□ -0.04
BEST3Q8N1M1 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
BEST3Q8N1M1 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
BEST3Q8N1M1 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
BEST3Q8N1M1 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
BEST3Q8N1M1 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.77□□□□□ -0.04
BEST3Q8N1M1 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC14.77□□□□□ -0.04
BEST3Q8N1M1 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC14.77□□□□□ -0.04
BEST3Q8N1M1 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
BEST3Q8N1M1 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC14.77□□□□□ -0.04
BEST3Q8N1M1 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC14.77□□□□□ -0.04
BEST3Q8N1M1 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
BEST3Q8N1M1 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
BEST3Q8N1M1 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
BEST3Q8N1M1 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.77□□□□□ -0.04
BEST3Q8N1M1 AL691432.1-201ENST00000596308 1422 ntBASIC14.77□□□□□ -0.04
BEST3Q8N1M1 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC14.77□□□□□ -0.04
BEST3Q8N1M1 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
BEST3Q8N1M1 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
BEST3Q8N1M1 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
BEST3Q8N1M1 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
BEST3Q8N1M1 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
BEST3Q8N1M1 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
BEST3Q8N1M1 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
BEST3Q8N1M1 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC14.77□□□□□ -0.05
BEST3Q8N1M1 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.77□□□□□ -0.05
BEST3Q8N1M1 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.77□□□□□ -0.05
BEST3Q8N1M1 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.77□□□□□ -0.05
BEST3Q8N1M1 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.77□□□□□ -0.05
BEST3Q8N1M1 AC245100.5-201ENST00000452108 331 ntBASIC14.77□□□□□ -0.05
BEST3Q8N1M1 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.77□□□□□ -0.05
BEST3Q8N1M1 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.77□□□□□ -0.05
BEST3Q8N1M1 FXR1-221ENST00000491674 365 ntTSL 2 BASIC14.77□□□□□ -0.05
BEST3Q8N1M1 AC093004.1-201ENST00000508850 424 ntBASIC14.77□□□□□ -0.05
BEST3Q8N1M1 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC14.77□□□□□ -0.05
BEST3Q8N1M1 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.77□□□□□ -0.05
BEST3Q8N1M1 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.77□□□□□ -0.05
BEST3Q8N1M1 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC14.77□□□□□ -0.05
BEST3Q8N1M1 SRD5A3P1-201ENST00000603021 949 ntBASIC14.77□□□□□ -0.05
BEST3Q8N1M1 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC14.77□□□□□ -0.05
BEST3Q8N1M1 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
BEST3Q8N1M1 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.77□□□□□ -0.05
BEST3Q8N1M1 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms